- Transcript 'Moocul.CG.ELv1_2.S61...' >
- Transcript 'KH2012:KH.C4.188.v1....' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C2.288.v2....' >
- Transcript 'Moocci.CG.ELv1_2.S56...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S561258.g21927.01.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
S561258 [11,343 / 14,747]
Amino acid sequence
Length: 1,061
>Moocci.CG.ELv1_2.S561258.g21927.01.p
MSSFGDNLFSVFDDQGESDQPCSSKSLNLSNKRKIDENDSKDNNHDQESHGDFGEEIEQA
VRRVREESQENIKKKAKLEEDYELTSILDSLPQVESKSIESLVSGCTHDISYRIGEEIPP
LRPREGPPAKEYKFLLDPFQQEALSCLDNNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQR
VIYTTPIKALSNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMR
EVAWVVFDEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQFAEWVCHLHQQPC
HVVYTDYRPVPLQHYVFPAGGDGLHLVVDENGNFKEDNFNTAMSILRDSGDNAKSDFDRK
GRKGGQKGDSSCLKIVKMIIERSFQPVIVFSFSKKECEFYALQVSKLDFNSDDEKNLVGE
VFTNAIDSLSEEDQKLPQVEAVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKCLFAT
ETFAMEGLIKCLFATETFAMGVNMPARTVLFTGCRKFDGKDFRWITGGEYIQMSGRAGRR
GMDDRGLVIMMVDEKMSPTVGKSLLKGNPDPLNSAFRLTYNMVLNLLRVEEINPEYMLEK
SFYQFQHYKAIPEILSKVEKLENKLQNIVIPDESLAMNYYKIRQQLKKLGTQQEEFIHKP
KYCLPFMQPGRLVKVCSFSDDLGWGVVVNFQKAPSSKSNNFVKAEAAEQEYVVDVLLHVT
SSSISKKNSTLPKPAGYEGSEKNEMAVIPIMLNLITAISSVRLYLPKDLRQRDNRESVLR
SVREVQKRFPDGLPLLDPIEDMGIKDDKLKAIILKIESFEKRLFQHEFHEKEDFKKAFDL
CEKKTQLEGEIKNSRRELKKARTVIQMDELKCRKRVLRRLGYAAMNDAIETKGRVACEIS
SSDELILTELIFNGVFNTLTVEQTCALLSCFVFDEKSKDTPKLSEFLAAPLRVLRETARR
IAKISAEAKMEIEEEEYVERFKHTLMDVVHAWCKGASFGEICRMTETFEGSIIRCMRRLE
ELLREMCHAAKAIGNTELENKFAKGMSTMKRDIVFAASLYL
Nucleotide sequence
Length: 3,186
>Moocci.CG.ELv1_2.S561258.g21927.01.t
ATGTCGAGTTTTGGAGACAATCTATTTAGCGTTTTTGATGATCAAGGAGAAAGTGATCAG
CCTTGTTCATCAAAATCTTTAAATCTTTCAAACAAAAGAAAAATTGATGAAAATGATAGT
AAAGATAACAATCATGACCAAGAAAGCCATGGGGATTTTGGTGAAGAAATAGAGCAAGCA
GTACGAAGAGTAAGAGAAGAAAGTCAAGAAAATATCAAGAAGAAAGCGAAATTGGAGGAA
GATTATGAATTAACTAGCATATTGGACTCATTACCTCAAGTTGAATCAAAGTCCATTGAA
TCCTTAGTATCTGGTTGTACACATGATATTTCATATAGAATTGGAGAAGAAATTCCACCA
TTAAGACCAAGAGAAGGTCCTCCTGCTAAAGAATACAAATTTCTTTTGGATCCATTTCAA
CAAGAAGCTCTTTCATGTTTAGATAACAATCAATCGGTTTTGGTATCTGCTCACACATCT
GCAGGAAAAACTGTCGTAGCTGAATATGCCATTGCTATGTCTTTACGAGATAAACAGAGG
GTAATTTATACAACACCTATCAAAGCTCTAAGTAATCAAAAATACAGGGATTTGTATGAG
GAATTTAGTGATGTTGGATTAATGACAGGTGATGTTACTATTAATCCTACTGCATCTTGT
CTTGTAATGACAACAGAAATTTTAAGAAGTATGTTGTATCGTGGTTCCGAAGTAATGCGT
GAAGTTGCTTGGGTTGTGTTCGACGAAATACATTACATGCGTAATAAGGAAAGAGGTGTT
GTATGGGAGGAAACTATTATACTCCTTCCCGACAATGTACGCTATGTTTTCTTATCTGCC
ACAATTCCTAATGCAAGACAATTTGCTGAGTGGGTATGCCATTTGCATCAACAACCTTGC
CATGTGGTTTATACAGATTACAGACCTGTTCCGTTACAGCACTATGTATTTCCAGCAGGA
GGTGATGGACTTCATCTAGTTGTTGATGAAAATGGAAATTTTAAAGAAGATAATTTTAAC
ACAGCAATGTCTATATTAAGAGATTCAGGAGATAATGCCAAAAGTGATTTTGATCGAAAA
GGTCGCAAAGGGGGACAGAAAGGAGACTCCAGTTGCTTGAAAATAGTTAAAATGATAATT
GAGCGAAGTTTTCAACCTGTTATTGTTTTTAGTTTCAGCAAAAAGGAATGTGAATTTTAT
GCATTGCAAGTTTCAAAGCTTGATTTTAATAGTGATGATGAAAAGAATCTTGTAGGGGAA
GTTTTCACTAATGCAATAGATTCATTATCAGAAGAAGACCAAAAACTTCCTCAAGTAGAA
GCTGTTTTGCCTTTACTAAAACGCGGAATTGGAATTCATCATGGTGGACTTTTACCCATT
TTAAAAGAAACGATAGAAATATTGTTTTCAGAGGGCTTAATTAAATGTTTATTTGCCACA
GAAACTTTTGCTATGGAAGGCTTAATTAAATGTTTATTTGCTACAGAAACTTTTGCTATG
GGTGTAAACATGCCTGCAAGAACTGTACTTTTTACAGGTTGCAGAAAATTTGATGGGAAA
GATTTTCGGTGGATAACTGGTGGTGAATATATTCAAATGAGTGGTAGAGCTGGAAGAAGA
GGCATGGATGATAGGGGCCTTGTTATAATGATGGTGGATGAAAAAATGTCCCCAACTGTT
GGCAAAAGTCTTCTCAAGGGTAATCCAGACCCATTGAATTCAGCTTTCAGATTAACATAT
AATATGGTTTTGAATCTTCTTCGTGTTGAGGAAATAAATCCTGAATACATGCTGGAAAAG
TCATTTTACCAATTTCAACATTATAAAGCTATTCCTGAAATCTTATCAAAGGTTGAAAAG
CTTGAAAATAAATTGCAAAATATTGTAATTCCAGATGAATCGCTTGCCATGAATTATTAC
AAAATTCGACAACAGTTGAAAAAATTAGGAACACAACAAGAAGAATTCATTCATAAACCT
AAGTATTGCCTTCCTTTTATGCAACCTGGGCGCCTAGTTAAAGTGTGCAGTTTTAGTGAT
GATTTGGGTTGGGGAGTTGTTGTGAATTTTCAAAAAGCACCAAGTTCAAAATCAAACAAT
TTCGTCAAAGCAGAAGCTGCAGAACAGGAATATGTTGTTGATGTACTACTTCATGTAACC
AGTAGCAGTATAAGCAAAAAAAATTCTACTCTACCTAAACCTGCTGGTTATGAAGGATCG
GAAAAGAATGAAATGGCTGTCATCCCAATTATGCTAAATCTGATAACCGCTATTAGTAGT
GTCAGATTATATTTGCCCAAAGATTTAAGACAGCGCGACAACAGAGAATCTGTACTTCGA
TCTGTTCGAGAAGTACAAAAAAGATTTCCTGATGGTTTACCTCTGTTAGACCCAATTGAA
GACATGGGGATTAAGGATGACAAATTAAAAGCCATTATACTAAAAATTGAGAGTTTTGAA
AAAAGGCTTTTTCAACACGAATTTCATGAAAAAGAAGATTTTAAGAAAGCTTTTGACCTA
TGTGAAAAGAAAACACAACTGGAAGGAGAAATTAAAAACTCTAGAAGGGAACTTAAAAAA
GCTCGGACAGTAATTCAGATGGATGAGCTTAAATGTAGAAAGCGAGTTCTGAGGCGTTTG
GGTTATGCAGCAATGAATGACGCTATTGAGACAAAAGGAAGAGTTGCATGTGAAATAAGT
TCTTCGGATGAGTTAATTTTAACTGAATTAATTTTTAATGGAGTGTTTAACACATTAACA
GTAGAGCAAACATGTGCTTTGTTAAGTTGCTTTGTTTTTGATGAAAAGTCAAAAGATACT
CCAAAGTTATCAGAGTTCCTTGCTGCCCCATTAAGAGTTTTGCGTGAAACTGCTAGAAGG
ATTGCAAAAATTTCAGCTGAAGCTAAAATGGAAATTGAAGAAGAGGAATATGTTGAAAGA
TTCAAGCATACATTAATGGACGTTGTCCATGCATGGTGCAAAGGTGCTAGTTTTGGTGAA
ATTTGCAGAATGACAGAAACATTTGAGGGTAGCATTATTAGGTGCATGAGAAGGTTAGAA
GAACTTCTCAGAGAAATGTGCCATGCTGCTAAAGCAATAGGCAATACTGAGCTGGAAAAT
AAATTTGCCAAGGGAATGTCTACAATGAAACGAGATATAGTATTTGCTGCCAGTTTGTAT
CTTTAA
| PIRSF |
Ski2-like (IPR016438) - T[5-486] 7.1E-215 - T[485-1061] 1.6E-202 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[132-315] 1.5E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[138-283] 7.6E-17 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[144-300] 23.241 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[147-285] 6.08E-46 - T[354-406] 6.08E-46 - T[446-555] 6.08E-46 |
| CDD |
Helicase_C (IPR001650) - T[372-551] 1.15418E-11 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[403-590] 11.077 |
| Pfam |
Helicase_C (IPR001650) - T[421-541] 3.0E-4 |
| SMART |
Helicase_C (IPR001650) - T[437-541] 2.6E-14 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[595-860] 2.9E-85 |
| SMART |
Ski2_C (IPR012961) - T[884-1061] 1.3E-91 |
| Pfam |
Ski2_C (IPR012961) - T[887-1056] 2.8E-56 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HFM1_HUMAN | 26.126 % | 117 | 2.08E-26 |
| MTREX_HUMAN | 67.479 % | 1466 | 0 |
| SKIV2_HUMAN | 35.766 % | 563 | 0 |