Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S573984.g22657.01.t

Possible name(s)

NKX6-1; NKX6-2; NKX6-3

Gene model

Moocci.CG.ELv1_2.S573984.g22657

Location

S573984 [42,482 / 46,038]

Sequences

Amino acid sequence

Length: 283

>Moocci.CG.ELv1_2.S573984.g22657.01.p
MDSSAASSAFLFNSNHVAAAMSALQAASSGFTEPRLTSQGYHSYPSFQCASGSQNLQKSL
NSPNSGTPFGINDILNRPSTSSDVSSNSSSPPSANSSNTPVGYFPGPHVPVTSPGAAIAA
AAAMYLGGGSMGATSAVPGTMLSQSHMGRFSKPLAELPGRSPIYWPGVLQKDWQEKFSCQ
VPYNKMADKIRFTATKMSLVRLGFSYYRVHHSVVITVGSHLSSSLTTHPGLIVDKFGKKK
HTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSFVVFDSKK

Nucleotide sequence

Length: 852

>Moocci.CG.ELv1_2.S573984.g22657.01.t
ATGGATAGCTCAGCCGCTTCGAGCGCTTTTTTGTTCAACAGTAATCATGTGGCTGCTGCC
ATGTCCGCTTTACAAGCCGCGTCCAGTGGATTTACCGAGCCGAGGCTGACGTCACAAGGT
TATCATTCTTATCCATCATTTCAGTGCGCTTCCGGGAGTCAAAATCTGCAGAAATCACTA
AATAGTCCGAATTCTGGGACTCCATTTGGAATAAACGACATTTTAAATCGACCCAGCACT
TCAAGCGACGTTTCGTCAAATAGTTCCAGCCCGCCCAGCGCAAATAGTTCTAATACCCCC
GTTGGATATTTCCCTGGACCCCACGTGCCTGTGACGTCACCGGGGGCAGCAATAGCGGCC
GCAGCAGCCATGTACTTAGGAGGAGGGTCAATGGGAGCAACATCTGCCGTTCCCGGGACC
ATGCTGAGTCAAAGTCACATGGGGCGGTTTTCAAAACCCTTGGCTGAACTTCCCGGTCGC
TCGCCCATCTACTGGCCAGGAGTATTGCAAAAAGATTGGCAGGAAAAGTTCTCTTGTCAA
GTACCGTATAACAAAATGGCGGATAAGATACGATTTACAGCGACGAAAATGTCGCTCGTT
CGGTTGGGATTTTCATATTATCGCGTGCATCATAGCGTTGTTATTACGGTGGGATCGCAT
TTATCGTCTAGTTTAACGACGCACCCAGGTTTGATTGTGGATAAATTTGGAAAGAAAAAA
CACACGCGCCCAACTTTTTCCGGCCAACAAATTTTTGCACTTGAAAAAACTTTTGAACAG
ACGAAATATCTGGCAGGTCCTGAAAGAGCGAGATTGGCGTATTCTTTCGTCGTATTTGAT
TCCAAAAAATAG

InterProScan

SUPERFAMILY	Homeobox-like_sf (IPR009057) - T[223-274] 2.1E-7
Pfam	Homeobox_dom (IPR001356) - T[240-274] 2.3E-5
CDD	Homeobox_dom (IPR001356) - T[240-273] 1.26588E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NKX62_HUMAN	35.16 %	107	1.99E-27
NKX61_HUMAN	46.377 %	115	4.63E-30
NKX63_HUMAN	72.222 %	83.2	9.31E-19