- Clone 'csef039m20' >
- Clone 'mae13c06' >
- Transcript 'Moocci.CG.ELv1_2.S58...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S589365.g23779.01.t
Possible name(s)
PCDH11X; PCDH11Y; PCDH18
Gene model
Location
S589365 [12,804 / 19,818]
Amino acid sequence
Length: 1,096
>Moocci.CG.ELv1_2.S589365.g23779.01.p
MKTAWSVCQLVGQLAIILVTIQETIGQGIRKSIAEETASDKYILNVPQELKIVNLPQKEF
KVITGNKYVTINPTSGDLRTRNKMDREALCPDNRPECTVDVEILLMAPKFPPEMIKIQLV
VTDINDNAPKFENSLIEKQISELTAVGTVIRLDSAVDPDLGANSIAGYSIEIPKGSRTPG
RNDNYFRLTEIKNADGTIIPQLTLRKKFDREELSVHELQLVARDGGKPQRRGVALVRINV
TDSNDNKPKFDQEKYDVLVAEDAQPDTVVTKLYKSSHSNQLGTNYGQLALNEHPVGSAVH
SIYDPFGKVTATDLDKGINGMVRYSFPSVVSSSDRELFALDTETGVITLKKLLDYESKQM
HHLTIEARDLGPNPTSAYATVTVKVLDVNDNKPEVNVKFLSEESVEESEGSITSQIPEDF
LVGDYLAFVTITDKDKGVNGTVACKMASAKFELTVVEKNENRYLLKTTAPLDREIHNSYD
LIIEAWDMGTPPLRSTKHVIIKLKDVNDNAPTFDHDEFIAGVKESATAKTIFQTLQAADR
DEGENSRITYTFKDTKDSITTSDGEIYPLTDIFAIDENSGEISLIKEGVLDAETNENPGT
ITVVAMDNGEPRLNTTTNLVISVIDDNDNSPYFEDDIDEYVFRIPEHSKYGSFVGRVKAT
DDDVTKSSNALVKYSLKQRTVEGVKGDDKWISFFVINEMSGEIHFYGNESKLDRESDHVS
PSTFVVVATDSGRPPLSDEKVLKIYLTDINDNAPIVSSPNVSRDVAFVRIPDMTSTDYYP
EEVMYDDDYMPTSYRQLNRKSKFASSVVIERPISVEDENDESYPVLTRVIATDPDEGENS
HVSFAIADGNNRNYFQIDHRSGNITFARDVDFSNMKHGCHVIKILVRDLGEVTQKTDAWV
NIYISTASEDDSNATEAMLDCKASPIYPLDLGKDPKVKAGAFGEFTMYIIIGALGEFTMY
IIIGLAALVIIIIIVIILVVIFARCNCCGGKGEKKYPIGGGGGIYSADRRKKAKQNLYEP
NPRQIGDQEGRSHPNGTVDSRSSFYSEWTQSQNQMHQAIFCKSEKILAPCYQISKPPPLR
FNFAGSKKIQAFVSLA
Nucleotide sequence
Length: 3,291
>Moocci.CG.ELv1_2.S589365.g23779.01.t
ATGAAGACCGCTTGGTCGGTATGTCAACTAGTAGGACAATTAGCGATTATATTAGTAACA
ATACAAGAGACAATCGGTCAAGGCATTAGAAAAAGTATAGCGGAAGAAACGGCAAGCGAT
AAATATATTCTGAACGTCCCACAGGAACTAAAGATTGTCAATCTACCGCAGAAGGAGTTT
AAAGTGATAACGGGGAACAAATATGTGACGATAAACCCCACATCCGGGGACCTGCGGACC
CGCAACAAAATGGACCGAGAGGCGCTGTGCCCGGACAACCGCCCTGAGTGCACGGTGGAC
GTTGAGATCCTCTTGATGGCGCCGAAGTTTCCACCCGAGATGATCAAAATACAACTGGTT
GTTACTGATATTAATGACAACGCTCCCAAGTTTGAGAACAGCTTGATCGAGAAGCAGATC
TCCGAGCTAACCGCGGTGGGGACAGTCATCCGATTGGACAGCGCTGTTGATCCTGACCTC
GGCGCTAATTCCATCGCTGGGTATTCCATAGAGATACCAAAAGGGTCTCGAACTCCGGGT
CGAAATGATAACTACTTCCGATTGACGGAAATAAAAAATGCTGACGGAACGATTATTCCG
CAGTTGACGCTTCGAAAGAAATTCGACCGGGAAGAGTTATCTGTGCACGAGCTCCAACTG
GTTGCCAGGGACGGGGGGAAACCCCAGCGGAGGGGCGTTGCCTTGGTACGGATAAACGTG
ACGGACTCGAACGACAACAAACCCAAATTTGACCAGGAAAAATACGACGTTTTAGTAGCG
GAAGACGCTCAGCCGGACACCGTTGTTACCAAGTTGTACAAATCTTCTCATTCAAACCAA
CTAGGCACAAATTACGGCCAACTAGCTTTAAATGAACACCCAGTAGGCTCAGCAGTGCAT
TCTATATATGACCCATTTGGTAAGGTTACGGCCACAGATTTGGACAAAGGGATAAACGGG
ATGGTTCGTTATTCCTTTCCGAGTGTCGTCAGCTCGTCGGATCGGGAACTATTTGCTCTC
GACACTGAAACTGGGGTGATTACTTTAAAGAAACTCCTGGATTACGAATCTAAACAGATG
CACCATTTGACGATAGAGGCGAGAGATTTGGGTCCAAACCCAACCTCAGCCTACGCCACT
GTCACGGTGAAGGTTCTCGACGTTAACGACAACAAGCCTGAAGTCAACGTTAAGTTTTTA
TCAGAAGAAAGCGTTGAAGAAAGCGAAGGAAGTATTACGTCACAAATACCGGAAGATTTC
TTGGTCGGGGATTATTTAGCCTTTGTGACGATTACAGACAAAGACAAAGGTGTAAATGGA
ACAGTGGCATGCAAGATGGCGAGCGCAAAGTTTGAGTTAACCGTAGTGGAAAAAAACGAG
AACAGGTATCTATTAAAAACGACCGCGCCGCTGGACAGGGAGATCCACAACAGTTATGAC
CTCATAATTGAGGCGTGGGACATGGGTACGCCTCCCCTCCGGAGCACGAAACACGTGATC
ATAAAACTGAAGGATGTCAATGACAACGCCCCCACTTTCGACCATGATGAGTTTATAGCG
GGGGTGAAAGAATCTGCCACCGCTAAAACAATTTTCCAGACTTTACAAGCCGCTGACAGA
GACGAGGGCGAAAACTCTCGCATCACCTACACCTTCAAAGACACGAAAGATTCCATAACG
ACTTCTGATGGGGAAATTTACCCTCTCACGGACATATTTGCCATTGACGAGAACAGTGGC
GAGATCAGCTTGATAAAGGAGGGAGTTCTTGACGCTGAAACCAACGAAAACCCCGGAACT
ATAACTGTGGTCGCGATGGACAACGGGGAACCCAGGCTCAACACAACAACCAACCTCGTG
ATCTCGGTCATAGATGATAACGACAACAGCCCTTACTTCGAGGACGACATCGACGAGTAT
GTTTTCCGGATTCCGGAGCACAGCAAGTACGGATCCTTCGTCGGCCGAGTCAAAGCGACC
GATGATGACGTCACAAAGAGCAGCAATGCGCTGGTGAAGTATTCCCTGAAGCAGCGGACC
GTGGAGGGAGTGAAGGGGGACGACAAGTGGATTTCGTTCTTCGTCATCAACGAGATGTCT
GGGGAGATCCACTTCTATGGAAACGAGTCCAAGTTGGACCGGGAATCTGATCATGTGAGC
CCCAGTACCTTCGTCGTGGTGGCCACCGATAGTGGGCGCCCTCCGCTCTCGGACGAGAAA
GTCCTCAAGATCTACCTGACCGACATCAACGATAACGCCCCCATCGTCTCCAGCCCCAAT
GTCAGTCGCGATGTTGCATTTGTTCGAATACCGGATATGACGTCAACGGATTATTACCCG
GAAGAAGTTATGTACGACGACGATTACATGCCGACGTCGTATCGTCAGCTTAATCGGAAG
TCGAAGTTTGCTTCGTCAGTCGTTATCGAGCGACCAATTAGCGTCGAAGACGAAAACGAC
GAATCGTATCCGGTTCTAACTCGCGTTATCGCTACGGATCCTGACGAGGGAGAAAACTCT
CACGTTAGTTTTGCCATTGCGGACGGCAACAATAGAAATTACTTCCAAATCGACCACAGA
TCCGGGAACATCACTTTTGCGCGCGACGTTGATTTTAGCAACATGAAGCACGGCTGTCAC
GTGATTAAGATTTTGGTTCGGGATTTGGGCGAAGTGACGCAGAAAACCGATGCATGGGTT
AACATTTATATATCCACGGCGAGCGAAGATGACTCCAACGCGACAGAAGCAATGTTGGAT
TGCAAGGCGAGCCCCATTTACCCCCTCGACCTTGGGAAAGACCCAAAGGTTAAGGCGGGA
GCTTTTGGGGAATTTACTATGTACATCATAATCGGAGCTTTGGGGGAATTTACTATGTAC
ATCATAATCGGTTTGGCGGCTCTGGTTATTATAATAATCATCGTTATCATCCTCGTTGTG
ATTTTCGCCCGGTGTAATTGTTGCGGGGGTAAAGGAGAGAAAAAATACCCCATTGGAGGG
GGAGGAGGGATTTACAGTGCCGACAGGAGGAAGAAAGCCAAACAGAATCTTTACGAGCCG
AATCCGCGACAGATTGGCGACCAGGAGGGCCGATCCCACCCGAACGGAACCGTTGACAGC
CGATCATCGTTTTACTCCGAGTGGACTCAATCACAGAACCAAATGCACCAGGCAATCTTT
TGTAAATCAGAGAAAATTCTTGCCCCATGCTATCAAATATCAAAGCCCCCACCGCTTCGG
TTTAACTTTGCTGGGTCAAAGAAAATCCAAGCATTTGTTAGTTTAGCTTAA
| Pfam |
Cadherin_N (IPR013164) - T[30-105] 9.0E-11 |
| SMART |
Cadherin (IPR002126) - T[36-129] 0.01 - T[153-248] 5.5E-18 - T[309-393] 2.7E-31 - T[429-511] 2.1E-18 - T[535-631] 8.2E-18 - T[657-754] 6.7E-17 - T[829-914] 3.4E-5 |
| PRINTS |
Cadherin (IPR002126) - T[67-86] 1.0E-31 - T[131-160] 1.0E-31 - T[215-227] 1.0E-31 - T[229-248] 1.0E-31 - T[248-261] 1.0E-31 - T[343-369] 1.0E-31 - T[377-394] 1.0E-31 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[120-269] 7.16E-24 - T[244-269] 3.71E-22 - T[307-388] 3.71E-22 - T[388-505] 1.57E-16 - T[501-637] 5.0E-23 - T[621-759] 8.09E-22 - T[820-904] 9.14E-13 |
| Pfam |
Cadherin (IPR002126) - T[139-241] 2.9E-11 - T[306-386] 9.5E-17 - T[414-503] 1.3E-11 - T[521-623] 6.2E-13 - T[640-746] 8.7E-9 - T[818-904] 1.0E-10 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[238-248] . - T[501-511] . - T[744-754] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 31.25 % | 319 | 4.07E-92 |
| PC11Y_HUMAN | 28.601 % | 317 | 1.7E-90 |
| PC11X_HUMAN | 28.466 % | 315 | 7.6E-90 |