Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S602550.g24778.01.t

Possible name(s)

LSM10; SNRPD1; SNRPD3

Gene model

Moocci.CG.ELv1_2.S602550.g24778

Location

S602550 [751 / 4,617]

Sequences

Amino acid sequence

Length: 124

>Moocci.CG.ELv1_2.S602550.g24778.01.p
MKLARFLMKLSHETVTIELKNGTQVHGTIAGVDICMNTHLKSVKMTVKNREPVSLETLSI
RGNNIRYFILPDSLPLDTLLVDEGPQRPRRGGFDRGGRGGRGRGGRGRGRGGRGRGRGGP
PRRY

Nucleotide sequence

Length: 803

>Moocci.CG.ELv1_2.S602550.g24778.01.t
ACTGCACGTTGTAAAGCAGACAATCTGATCGTTGTTGACGGTTAATTTTTATTGTTGTAG
GTTGCAACAAAACTCACAATCATGAAGCTAGCAAGATTTTTGATGAAATTGAGTCATGAA
ACAGTAACAATCGAACTTAAAAATGGCACTCAAGTCCATGGAACAATTGCAGGTGTTGAC
ATTTGCATGAACACACATTTAAAATCTGTGAAAATGACAGTAAAAAATCGCGAACCTGTC
TCGCTGGAAACACTTAGTATCCGTGGAAACAACATCCGGTATTTTATCCTTCCTGACAGT
TTACCGCTGGATACACTTCTCGTGGACGAAGGACCACAGAGACCCAGAAGAGGAGGGTTT
GACCGAGGTGGAAGAGGTGGACGTGGAAGAGGAGGAAGAGGACGTGGAAGAGGAGGACGT
GGGCGTGGCAGAGGTGGTCCTCCAAGACGATATTAGATTTCTATGGGCCTGGATTTTGTG
CATTCGGATTAAACTTTTTAATATATTAGTCACTTTTCAATATATTATATTCAATTTGAT
CGCAGTTTTTACAAAGACGAATCTTGCATTAAATTTCTACTTTTTAACTAAAACATGTAT
TAACGTAACGTAGCTATTAAACCTTTTTGATAATTTTTTTATTTTCAATATCAAGTCATT
TTCCGGGCCTTTTCTGTCATGTGACACACTTTGTTTTGTATCTTAACAACTTAGTGGACA
AAGACTTTGTTCTTTTAAACCCTAGGTACCTAGATATGAATTGTATTGTTTCATGCTAAT
AAATCATCGTTTTTAATGTATAA

InterProScan

PANTHER	LSm4/Sm_D1/D3 (IPR027141) - T[1-106] 1.5E-47
CDD	Sm_D1 (IPR034102) - T[2-86] 1.56713E-58
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[5-122] 8.18E-27
Pfam	LSM_dom_euk/arc (IPR001163) - T[5-69] 5.0E-19
SMART	LSM_dom_euk/arc (IPR001163) - T[5-70] 5.8E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SMD1_HUMAN	88.372 %	160	1.95E-52