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  1. Transcript 'KH2012:KH.S812.2.v1....'
  2. Transcript 'Moocci.CG.ELv1_2.S61...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S617234.g26082.01.t

Possible name(s)

POLR1A; POLR2A; POLR3A

Location

S617234 [1,647 / 21,683]

Sequences

Amino acid sequence

Length: 1,984

>Moocci.CG.ELv1_2.S617234.g26082.01.p
MEGFGDSTIPLRNVKRLQFGILSPDEIKRMSVTEGGVQFPEAMEGGRPKLLGLMDPRQGV
IDRMSRCQTCTGNMTECPGHFGHIELAKPVFHVGFLTKTIKVLRCVCFYCSKLLVDKSNP
KIKNIIAKSKGQPRKRLTHVYDLCKGKNICEGGEEMDETFDTTQQREDDEPKKVGHGGCG
RYQPKFRRTGIELTAEWKHVNEDSQEKKIPLTAERVHEIFKRISDEESEILGMDPRYARP
EWMIITVLPVPPICVRPSVVMGGGSARSQDDLTHKLADIIKSNQQLHRNEQNGIAAHIIA
EDIKLLQFHVATLSDNELPGVPRALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNLKIDTIGVPRSIAANLTYPEIVTPFNIDRMYELVRRGNNQYPGAKYIIRDSG
DRIDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVKVLPWSTFRM
NLSVTTPYNADFDGDEMNMHIPQSMETRAEILELAMVPRMIITPQSNRPVMGIVQDTLTA
VRKMTKRDSYIDKETFMNLLMYLEDWDGHLPQPAILKPKALWTGKQLFSMIIPGGVNCIR
THSTHPEGEDSGPYKHISPGDTKVIVENGVLLSGIICKKSLGTSSGSLCHVVALEHSPDV
CRDFYSNIQTVVNNWLLVEGHSIGIGDTIADAQTYQDIQNQIRKAKQEVIEVIEKAHKED
LQPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGR
EGLIDTAVKTAETGYIQRRLIKAMEAVMVRYDGTVRQANNAVIQFRYGEDGLAGERVEFQ
TLATLKPSHKSFEDKFRMDYTNERKLRRCFTEEIVRDIQSDVSKQRALDAEFERLTQDRE
VARTIFPTGDNKVVLPVNLSRLIWNAQKIFHIDLRQVSSVDPIRVIEGVQELSKKLVIVG
GEDRLSKEAQHNATLLVNTHLRSTLCTKRVSGEYRLTPEAFEWILGEIETRFQQAQAHPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTIFLT
GPATRDAQRCKDVLCRLEHSTLWKVTANTAIYYDPEPMNTVILEDQEFVNVYYEMPDFDV
SRISPWLLRIELDRKRMTDKKLTMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRLRIMTN
DQQKSEESAEEQVDQMDDDVFLRYLEANMLTDMTLQGIPQISKVYMHLPKEESKKRIVID
REGQFNAVQDWILETDGTALMQILSERDVDPVRTTSNEICEIFSVLGIEAVRKAIENEIY
HVISFDGSYVNYRHLALLCDVMTSKGHLMAITRHGINRQDTGALMRCSFEETVDILMEAA
SSAETDFMAGVSENIMLGQLIPGGTGCFDLLLDAEKCKYAMEIPTNIGGVGGTGMFFGAM
PSPSSMSPQMTPWSGGTTPGFAGAYTPGYGTGMTPRAAAFSPAQSDASGFSPAGYSPAWS
PAQSPGPASPASPYIPSPKHGAMSPSYSPVSPAYEPGTPGTPQSPKYMPGYTPTSPTYSP
TSPRYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPSY
SPASPSYSPTSPKYSPTSPSYSPTSPEYSPTSPKYQPSSPSYSPTSPSYSPSSPSYSPSS
PKYSPSSPQYSPSSPQYSPSSPKYSPTSPQYSPTSPGYSPTSPEYSPSSPSYSPSSPTMD
SGSPSYSAGYSPTSPSYSPTSPAYSPSSPQYTPTSPAYTPGDIDTPSTPAYSPSSPAYSP
ASPK

Nucleotide sequence

Length: 6,359

>Moocci.CG.ELv1_2.S617234.g26082.01.t
TTTGTTCACATTATCGTAAATAAAAGTTTATTTATTTACTTTTGATAGCAGATATTAGTA
TGTGCAGTTGATGCATTGAAAAATATTCCAATCAAGGAAGAAAAATTAAAATATTTTTAA
TTTTAATGTTTTTACACTGGCGCGAAATTTAAACACGTGCTGAGCTCGTAAGTGTCGGAC
GTTAAAAATGGAAGGATTTGGAGATTCAACTATTCCGTTGCGGAATGTTAAAAGACTGCA
GTTCGGCATCCTTAGTCCAGATGAAATAAAACGGATGTCAGTAACAGAGGGAGGGGTTCA
GTTTCCTGAAGCAATGGAAGGGGGACGACCAAAGCTTCTTGGTCTCATGGATCCACGGCA
AGGTGTAATAGATCGCATGTCCAGATGTCAAACTTGTACAGGAAATATGACAGAATGCCC
TGGTCACTTTGGTCACATTGAACTTGCCAAGCCAGTCTTTCATGTTGGGTTTTTGACCAA
AACAATTAAAGTGTTGCGATGTGTTTGTTTTTATTGTTCAAAACTTCTAGTTGATAAAAG
TAATCCAAAAATAAAAAATATAATTGCGAAATCCAAAGGGCAACCTAGGAAACGTTTGAC
CCACGTTTATGATCTATGCAAAGGTAAAAACATTTGTGAAGGGGGAGAAGAAATGGACGA
AACATTTGATACAACACAGCAAAGAGAAGATGATGAACCGAAAAAAGTTGGTCATGGTGG
TTGTGGGAGATACCAGCCAAAGTTTCGTCGTACCGGAATTGAACTGACAGCAGAATGGAA
GCATGTCAATGAAGATTCACAAGAAAAGAAAATACCTCTTACTGCTGAACGAGTTCATGA
AATTTTTAAGAGAATATCAGATGAAGAATCAGAGATTTTGGGAATGGATCCTCGGTATGC
TCGCCCAGAGTGGATGATAATTACAGTTTTACCTGTTCCACCAATCTGTGTTCGACCATC
TGTGGTTATGGGGGGTGGGAGTGCTAGAAGCCAGGATGATTTAACCCACAAACTTGCAGA
CATTATCAAATCTAACCAACAGCTCCATAGAAATGAGCAAAATGGTATTGCAGCACACAT
TATTGCAGAAGATATTAAATTATTACAGTTCCATGTTGCAACCCTTAGTGATAATGAACT
TCCTGGAGTTCCAAGAGCTCTCCAAAAATCCGGCAGACCTTTAAAATCAATAAAACAACG
ACTGAAAGCAAAAGAAGGCCGAATTCGTGGAAATCTTATGGGAAAGCGAGTGGATTTTTC
AGCTCGTACAGTCATCACACCAGATCCCAATCTAAAAATTGACACAATTGGTGTACCACG
TTCTATAGCAGCAAATTTAACTTATCCTGAAATTGTGACTCCTTTCAACATTGATCGTAT
GTATGAATTGGTACGACGGGGAAACAACCAGTATCCTGGTGCAAAATATATTATAAGAGA
TTCCGGTGACAGAATTGATCTTCGTTACCATCCCAAACCTTCCGATTTGCACTTACAAGT
TGGATATAAGGTTGAACGGCACATTAAAGACGGGGATGTGATTGTGTTTAATCGACAACC
AACTCTGCATAAAATGTCCATGATGGGTCACAAGGTCAAGGTTCTCCCATGGTCAACGTT
TCGCATGAATTTGTCTGTCACCACACCATATAACGCCGACTTTGATGGTGACGAAATGAA
CATGCATATTCCTCAATCGATGGAGACACGAGCCGAAATATTGGAACTTGCCATGGTACC
AAGAATGATCATCACCCCTCAAAGCAATCGTCCCGTAATGGGCATTGTACAAGATACACT
GACTGCAGTCAGAAAAATGACAAAAAGAGATTCATATATAGATAAAGAAACTTTCATGAA
CCTACTAATGTATTTGGAAGACTGGGATGGTCATTTACCTCAACCTGCAATTCTCAAGCC
TAAAGCACTGTGGACGGGCAAACAGTTGTTCTCCATGATTATACCGGGTGGGGTCAACTG
TATACGAACCCACAGTACCCATCCCGAAGGTGAAGACTCGGGCCCTTACAAACATATATC
TCCCGGTGACACTAAGGTAATTGTTGAAAATGGTGTGTTACTGAGTGGCATAATCTGCAA
GAAATCTCTCGGAACATCATCAGGATCTCTTTGTCACGTGGTGGCGCTAGAGCATTCACC
AGATGTGTGCAGGGATTTCTACAGCAACATCCAAACCGTTGTTAACAACTGGTTGCTGGT
GGAAGGCCATTCAATTGGTATTGGTGACACTATTGCAGACGCACAAACATACCAAGATAT
TCAGAACCAAATTCGCAAAGCCAAACAGGAGGTCATAGAGGTCATTGAAAAAGCACATAA
AGAAGACTTGCAGCCTACACCTGGCAACACTTTAAGACAAACTTTTGAAAATCAAGTAAA
TAGAATATTGAATGATGCTCGTGACAAAACTGGTTCATCTGCCCAGAAAAGTTTATCTGA
GTTCAATAACTTCAAAGCTATGGTGGTTGCAGGGTCAAAAGGTTCAAAGATTAATATCTC
ACAAGTTATTGCTGTTGTGGGGCAACAGAACGTTGAGGGTAAACGAATACCGTTTGGATT
TCGTCATCGAACATTACCTCATTTTATTAAAGATGATTATGGTCCTGAATCTCGTGGATT
TGTTGAGAACTCTTACCTTGCCGGTTTGACCCCAACTGAATTTTACTTTCACGCTATGGG
AGGTCGAGAAGGTTTAATCGATACCGCTGTCAAAACTGCTGAGACAGGATACATTCAGCG
TCGATTAATTAAAGCTATGGAAGCAGTTATGGTACGATACGATGGTACAGTACGTCAAGC
AAACAACGCTGTTATTCAGTTTCGTTATGGTGAAGATGGTTTGGCAGGAGAGCGTGTTGA
ATTTCAAACTTTGGCTACACTAAAACCGAGTCATAAATCTTTTGAAGATAAATTCCGCAT
GGATTATACAAATGAGCGAAAACTGCGTCGATGTTTTACCGAAGAAATTGTTCGGGACAT
ACAATCAGATGTTAGTAAACAACGAGCACTGGATGCAGAGTTTGAGCGATTAACACAGGA
CAGAGAAGTTGCTAGAACCATCTTTCCTACTGGAGACAATAAGGTTGTTCTTCCTGTCAA
TTTAAGTCGATTAATTTGGAACGCCCAAAAAATTTTCCACATAGATTTGAGGCAAGTATC
TTCAGTTGATCCGATTAGAGTTATCGAGGGGGTGCAAGAACTAAGCAAGAAATTGGTGAT
AGTAGGAGGGGAGGATAGATTGAGTAAAGAAGCTCAACATAATGCAACACTGTTGGTTAA
CACTCATTTAAGATCAACGTTATGCACAAAACGAGTATCTGGTGAATACAGGCTAACTCC
TGAAGCATTTGAATGGATCCTTGGTGAAATAGAAACAAGGTTCCAACAAGCGCAGGCTCA
TCCAGGTGAAATGGTGGGAGCATTGGCTGCCCAATCCCTAGGAGAACCTGCTACTCAGAT
GACCTTGAACACTTTCCATTATGCTGGTGTATCAGCAAAGAACGTCACGCTAGGTGTGCC
TCGTTTAAAGGAATTGATCAATATTTCTAAAAAGCCCAAAACCCCATCACTCACAATTTT
CCTTACCGGACCGGCTACAAGAGATGCACAACGGTGTAAGGATGTGCTATGTCGACTTGA
ACATTCGACGTTATGGAAAGTTACTGCAAACACCGCTATTTATTATGACCCTGAACCCAT
GAACACTGTTATACTAGAAGATCAAGAATTTGTCAATGTTTATTATGAAATGCCAGATTT
TGATGTGTCTAGAATTTCACCATGGCTGCTACGTATAGAACTGGATAGAAAAAGAATGAC
AGACAAGAAACTAACTATGGAACAAATTGCTGAAAAAATTAGCGCAGGATTTGGTGATGA
TCTTAACTGCATATTTAACGATGACAATGCAGAAAAACTAGTCCTACGACTTAGGATAAT
GACCAATGACCAGCAAAAATCTGAGGAAAGTGCAGAAGAGCAAGTGGATCAGATGGACGA
TGATGTTTTTCTCCGATACCTTGAGGCCAACATGCTCACTGATATGACTTTGCAAGGAAT
CCCTCAGATATCTAAGGTGTACATGCATTTGCCCAAAGAAGAAAGCAAGAAACGCATTGT
TATTGATCGCGAAGGCCAATTTAACGCTGTTCAAGATTGGATATTGGAAACTGACGGAAC
TGCACTTATGCAGATATTGTCTGAACGGGATGTTGATCCTGTCAGAACAACTTCCAATGA
GATATGTGAAATTTTCTCAGTACTTGGTATAGAGGCTGTCCGTAAAGCAATTGAAAATGA
AATCTACCACGTCATATCATTTGATGGTTCCTATGTAAACTACAGACATCTTGCTCTTTT
GTGTGACGTTATGACATCTAAAGGTCATTTAATGGCGATTACAAGACATGGAATTAACAG
ACAAGATACAGGAGCACTTATGAGATGTTCTTTTGAAGAAACCGTAGATATTTTAATGGA
GGCTGCATCTTCAGCTGAGACAGATTTCATGGCAGGAGTATCTGAGAACATTATGTTGGG
ACAATTGATACCCGGAGGAACTGGATGTTTTGATCTTCTACTTGATGCTGAAAAGTGCAA
ATATGCTATGGAAATTCCAACCAATATCGGAGGCGTTGGTGGAACTGGTATGTTCTTTGG
AGCAATGCCATCTCCATCATCTATGTCACCACAAATGACACCATGGAGTGGTGGAACTAC
ACCAGGATTTGCAGGAGCATACACCCCTGGGTATGGAACGGGAATGACACCAAGAGCAGC
TGCTTTTTCACCAGCTCAATCAGATGCATCTGGATTTTCTCCAGCAGGGTACAGTCCAGC
TTGGAGTCCTGCACAATCCCCTGGTCCGGCAAGTCCAGCTTCTCCTTATATTCCATCTCC
AAAGCATGGTGCTATGTCACCCAGTTATTCGCCAGTATCTCCTGCTTACGAACCAGGTAC
ACCAGGAACTCCACAGAGTCCGAAGTACATGCCTGGTTACACGCCGACAAGCCCTACATA
CTCACCAACATCCCCAAGATACTCCCCGACAAGTCCAGGATACAGTCCAACCTCACCGTC
GTATTCACCGACAAGTCCTTCCTATTCACCTACAAGTCCAAGCTACAGTCCCACATCACC
ATCATACTCTCCAACATCACCAAGTTACTCTCCAACAAGCCCAAGCTACAGTCCTACGTC
CCCATCATATTCCCCAACCAGCCCATCTTATTCACCCACTTCCCCAAGTTACTCCCCAAC
AAGCCCCAGTTACAGCCCCACTTCTCCTTCATATTCACCAACATCGCCTTCATATTCTCC
TACTAGTCCGAGCTACAGTCCTACGAGTCCTTCATATTCCCCAACTTCACCCAGTTATTC
ACCTACCAGTCCCAGTTACAGCCCAACCTCTCCTAGTTACAGCCCCACTTCACCTTCCTA
TTCACCAACAAGCCCTTCATACTCCCCCACCAGTCCCAGTTACTCCCCATCCAGCCCTTC
ATACTCCCCAAGTAGTCCTTCATATTCCCCATCAAGTCCAAGTTATTCTCCATCATCACC
ATCATACAGTCCAGCATCTCCAAGCTATTCACCAACCAGTCCAAAGTATTCACCAACAAG
TCCATCATACAGTCCGACTTCACCGGAGTACAGTCCAACAAGTCCAAAATATCAGCCATC
AAGCCCAAGTTATTCTCCAACATCTCCAAGCTATTCACCATCTTCACCGAGTTATTCACC
ATCAAGCCCAAAATATTCTCCTTCAAGTCCCCAGTACTCACCATCGAGTCCACAATACTC
ACCTTCAAGTCCGAAATACTCTCCAACAAGCCCACAGTACTCCCCAACAAGCCCTGGGTA
TTCACCAACCAGTCCGGAGTATTCACCATCTTCACCCAGTTATTCCCCATCAAGTCCGAC
TATGGATTCTGGAAGCCCAAGTTACAGTGCTGGTTATTCTCCAACCAGTCCTAGTTACTC
TCCCACAAGCCCGGCTTACTCTCCATCGAGTCCGCAATATACACCGACAAGTCCTGCATA
CACGCCTGGGGATATAGATACGCCTTCAACACCAGCTTATTCACCTTCAAGTCCTGCCTA
TTCTCCTGCAAGTCCAAAGTGAAAACCAAGATTGTGTTTGTGCTTTTAATGATGGGTTTG
TGTATAACAGAGCAAAACATGCAGTTCTTTATTGTATTATCTTTTTAAAAACTTCATACT
TGAACAAAAAACGTTGTACAATCAATTATTATATTAATTTTATTGTATGAAACTGAATGA
TTGAACTTTCACTGTATATAAAAGAGGTGTGAATAATAAATTCTTTCAAGCATACAAAA

InterProScan

Pfam
RNA_pol_Rpb1_1 (IPR007080) - T[12-350] 1.3E-106
SMART
RNA_pol_N (IPR006592) - T[241-545] 2.4E-198
Pfam
RNA_pol_asu (IPR000722) - T[352-517] 1.9E-74
Pfam
RNA_pol_Rpb1_3 (IPR007066) - T[521-688] 1.7E-49
Gene3D
Rpb1_funnel_sf (IPR038120) - T[683-828] 2.6E-54
Pfam
RNA_pol_Rpb1_4 (IPR007083) - T[714-819] 7.8E-37
Pfam
RNA_pol_Rpb1_5 (IPR007081) - T[826-1423] 3.8E-99
Pfam
RNA_pol_Rpb1_6 (IPR007075) - T[892-1075] 3.6E-66
Gene3D
RNA_pol_Rpb1_7_sf (IPR038593) - T[1160-1297] 3.5E-54
Pfam
RNA_pol_Rpb1_7 (IPR007073) - T[1161-1296] 4.2E-53
Pfam
RNA_pol_II_repeat_euk (IPR000684) - T[1588-1600] 1.9 - T[1602-1618] 4.9 - T[1619-1632] 0.0026 - T[1633-1646] 0.46 - T[1647-1660] 0.48 - T[1661-1674] 0.5 - T[1675-1688] 0.54 - T[1682-1695] 0.65 - T[1689-1702] 0.63 - T[1696-1709] 0.69 - T[1703-1716] 0.62 - T[1710-1723] 0.69 - T[1717-1730] 0.65 - T[1724-1737] 0.71 - T[1731-1744] 0.66 - T[1738-1751] 0.71 - T[1745-1758] 0.65 - T[1752-1765] 0.69 - T[1759-1772] 0.66 - T[1766-1779] 7.3 - T[1801-1814] 0.055 - T[1808-1821] 0.058 - T[1822-1835] 0.0039 - T[1850-1863] 8.1 - T[1864-1877] 1.7 - T[1878-1891] 0.29 - T[1892-1905] 0.0059 - T[1938-1951] 0.078 - T[1945-1958] 0.73 - T[1972-1984] 1.4
ProSitePatterns
RNA_pol_II_repeat_euk (IPR000684) - T[1639-1645] . - T[1646-1652] . - T[1653-1659] . - T[1660-1666] . - T[1674-1680] . - T[1681-1687] . - T[1688-1694] . - T[1695-1701] . - T[1709-1715] . - T[1716-1722] . - T[1723-1729] . - T[1730-1736] . - T[1744-1750] . - T[1751-1757] . - T[1758-1764] . - T[1765-1771] . - T[1807-1813] . - T[1814-1820] . - T[1828-1834] . - T[1849-1855] . - T[1856-1862] . - T[1905-1911] . - T[1912-1918] . - T[1937-1943] . - T[1951-1957] . - T[1971-1977] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RPA1_HUMAN 33.436 % 332 5.89E-92
RPC1_HUMAN 37.829 % 582 8.57E-179
RPB1_HUMAN 77.908 % 2675 0





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