Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S625694.g26822.01.t

Possible name(s)

RPS27A; UBB; UBC

Gene model

Moocci.CG.ELv1_2.S625694.g26822

Location

S625694 [13,276 / 13,966]

Sequences

Amino acid sequence

Length: 229

>Moocci.CG.ELv1_2.S625694.g26822.01.p
MQIFVKTLTGKTITLEVEASDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKTKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKT
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI

Nucleotide sequence

Length: 690

>Moocci.CG.ELv1_2.S625694.g26822.01.t
ATGCAAATCTTTGTCAAAACTTTAACAGGAAAAACCATTACTTTGGAGGTTGAAGCTTCA
GATACTATTGAAAATGTTAAAACAAAAATCCAGGACAAAGAAGGTATTCCACCAGATCAA
CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGCCGCACTTTAAGCGACTACAAC
ATCCAAAAAGAATCCACACTTCACTTAGTCCTCAGATTAAGAGGAGGAATGCAAATCTTT
GTAAAAACCCTTACTGGAAAGACCATTACCTTGGAGGTTGAAGCTTCAGATACCATTGAA
AATGTAAAGACCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAACGTTTGATT
TTTGCTGGCAAACAATTGGAAGATGGTCGTACTTTGAGTGACTACAACATCCAAAAGGAA
TCTACACTTCATTTGGTCCTCAGATTAAGAGGAGGAATGCAAATCTTTGTAAAAACCCTC
ACTGGAAAGACCATCACCTTGGAGGTTGAGGCTTCAGATACCATTGAAAATGTTAAAACG
AAAATACAAGACAAAGAAGGAATTCCTCCAGATCAGCAACGATTGATCTTTGCTGGTAAA
CAATTGGAAGATGGTCGCACATTGAGTGATTACAACATTCAAAAAGAATCTACTCTTCAT
CTTGTTCTTCGACTTAGAGGAGGAATCTAA

InterProScan

SMART	Ubiquitin_dom (IPR000626) - T[1-72] 4.1E-35 - T[77-148] 4.1E-35 - T[153-224] 4.1E-35
SUPERFAMILY	Ubiquitin-like_domsf (IPR029071) - T[1-76] 7.32E-34 - T[76-152] 3.11E-34 - T[151-228] 1.82E-34
ProSiteProfiles	Ubiquitin_dom (IPR000626) - T[1-76] 30.648 - T[77-152] 30.648 - T[153-228] 30.648
Pfam	Ubiquitin_dom (IPR000626) - T[3-74] 3.5E-33 - T[79-150] 3.5E-33 - T[155-226] 3.5E-33
PRINTS	Ubiquitin (IPR019956) - T[11-31] 6.4E-38 - T[32-52] 6.4E-38 - T[53-74] 6.4E-38
ProSitePatterns	Ubiquitin_CS (IPR019954) - T[27-52] . - T[103-128] . - T[179-204] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL40_HUMAN	97.403 %	154	5.79E-48
UBB_HUMAN	96.943 %	439	2.59E-159
UBC_HUMAN	96.943 %	440	5.21E-153