- Transcript 'Moocci.CG.ELv1_2.S63...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S633426.g27744.01.t
Possible name(s)
SNRNP40; WDR5; WDR5B
Gene model
Location
S633426 [288 / 3,083]
Amino acid sequence
Length: 304
>Moocci.CG.ELv1_2.S633426.g27744.01.p
MAPIMLLSGHAGEIYSAKFHPDGDVIASAGHERLIFLWTVYGECENYFVMKQAHKGSILE
LVFNTDGSTIFTASTDKTVGMFDTESGDRIKRMKGHEAIVNSCASTRRGDQMVASGSDDC
TVKIWDVRKKGAVKSLQSTYQVTSVMFNDTSEQVISGGIDNDIKVWDLRNESTSLSLLGH
TDTITGLSLSADGSFLLSNSMDGTLRVWDVRPYAPTDRCVKILGGHQHNFEKNLLRCSWS
PDGRRIAAGSGDRFVYVWDTTTRQILYKLPGHLGNVMLERQEYIFGRNSVNSTKGIWHGV
KSQE
Nucleotide sequence
Length: 1,268
>Moocci.CG.ELv1_2.S633426.g27744.01.t
CACTTTTGTTTTAGGGACCCCCAAGAACTTCCAATCTTATGGCCCCAATCATGCTTTTAT
CTGGACATGCTGGAGAAATATATTCAGCAAAATTTCATCCAGATGGTGATGTCATAGCAT
CAGCTGGACATGAGCGACTTATTTTTTTATGGACAGTGTATGGGGAATGTGAGAATTACT
TTGTAATGAAGCAAGCACATAAAGGTTCCATTTTGGAATTGGTTTTTAATACAGATGGAA
GCACAATTTTTACTGCAAGCACAGATAAAACGGTTGGAATGTTTGACACCGAATCTGGAG
ATCGTATAAAGAGAATGAAAGGTCATGAAGCAATTGTGAACAGTTGTGCCTCCACTAGAC
GTGGGGATCAAATGGTTGCTTCCGGTAGTGATGATTGTACTGTCAAGATTTGGGATGTTA
GAAAAAAGGGGGCTGTAAAATCTCTGCAATCAACATATCAAGTTACTTCTGTAATGTTTA
ATGACACATCAGAGCAGGTTATTTCTGGTGGTATTGATAATGATATTAAGGTATGGGATT
TACGTAATGAGAGTACTTCTTTATCTTTACTTGGTCATACTGATACTATTACTGGATTGA
GTTTGAGTGCTGATGGTTCGTTTTTACTCTCAAATTCTATGGATGGGACTTTAAGAGTAT
GGGATGTAAGACCTTATGCTCCAACTGACCGTTGTGTTAAAATACTTGGTGGTCACCAGC
ATAATTTTGAAAAGAACTTGCTGCGATGTAGCTGGTCACCTGATGGCAGGCGTATTGCGG
CTGGTTCAGGCGATCGCTTTGTTTATGTCTGGGACACAACAACACGTCAAATACTCTACA
AACTACCAGGTCATCTGGGTAATGTCATGCTCGAGCGACAAGAATATATATTTGGGAGAA
ATTCAGTGAATTCAACCAAGGGCATTTGGCATGGTGTAAAATCACAAGAGTAGTAACTGT
GCTCAAGACAAGGAGGTTTTCTGCTGCGCGAATTCCAAATATATTTTCTTTATTCAACAA
TGAACTTTTATATAATATTAAATATGGATGCTATGTATCATAAAAGTCCTATTTAGCAAT
AGAATAAGTTTGTAAATAAATACTGTTTGCAAAATATCAATGTTATATCTTAGGTCTAAA
ATATAAACATTTCTTTTTTTAATTATAACATGTAGTAGTTGTACAGATTTATCTTTCATC
AAACTGCAGTTGTGTAACAAGTGCCCTTTTGGTATCAACATCTCTTTTTATATGTAGGGT
AATATTTT
| SMART |
WD40_repeat (IPR001680) - T[1-39] 0.013 - T[43-83] 0.011 - T[86-126] 5.6E-8 - T[129-167] 2.6E-4 - T[170-209] 3.1E-7 - T[216-259] 2.7E-8 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-276] 2.75E-72 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[3-279] 3.0E-90 |
| Pfam |
WD40_repeat (IPR001680) - T[4-38] 6.1E-4 - T[90-126] 6.4E-6 - T[142-167] 0.035 - T[176-209] 8.8E-7 - T[218-259] 2.9E-6 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[7-40] 12.413 - T[51-92] 11.11 - T[93-135] 12.246 - T[142-176] 12.28 - T[177-211] 15.755 - T[238-268] 11.143 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[7-268] 47.853 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[113-127] 1.2E-8 - T[154-168] 1.2E-8 - T[196-210] 1.2E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[113-127] . - T[154-168] . - T[246-260] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 30.545 % | 135 | 1.19E-37 |
| WDR5B_HUMAN | 32.222 % | 140 | 1.65E-39 |
| SNR40_HUMAN | 66.182 % | 413 | 1.28E-145 |