- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Moocci.CG.ELv1_2.S64...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S640108.g28706.01.t
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
S640108 [12,007 / 21,715]
Amino acid sequence
Length: 858
>Moocci.CG.ELv1_2.S640108.g28706.01.p
MEDEELMVSNFRHINIFDGQWHTLLLHVVMNETNLANVQLLVDCVEVGKDEISPWLGNDL
AENSTNLSLKIGHKSSVDSRSHIRRATLVYDEQLPLVRRNYGGFCPQSDKYSSADPNVYA
FNTIEANPLSELSVQIADLTSVLHEIQVAIKLQTSETKDLRSAIQQCSLCGRSPLPPHYV
SPKQPVVDQPEVPTVNVVKCSTNPCYQGVNCTDTEEGFVCGSCPEGFAGNGTHCSDANEC
GANNPCSDIAGCENTPGGYFCNPCPQGYTQSFQEQFLNGLFIQKQICTDEDECIFGNGNC
VPNSHCINTQGSFTCGNCLQGYIGNQTVGCKKSRQCEDGGLNPCHEHAHCLVINKGEDYA
CECEIGYAGNGFTCGFDLDLDSFPDENLPCSEKKCLKDNCPSVPNSGQEDYDLDGVGDAC
DSDADNDEIINEHDNCVLMPNPFQQNSDNDPFGDACDNCPNVNNPKQTDSNNNGEGDECD
NDKDGDGVSDELDNCPLVPNYSQDDVDGDRVGDACDNCPNLSNPLQMDSDDDYIGDACDS
DVDSDGDGIQNDRDNCPTVINSAQLDTDNDGIGDLCDEDDDGDGVPDYGGIMGSDNCRLI
HNPDQFDQDRNGVGDVCEGDQDGDGVNDWWDTCPFNRDIRLTDFRAFQTVSLEPISEETI
QPFWMVLDEGREIVQTKNSDPGLAIGYASFNGVDFSGTFFVNTAADDDYAGFLFSYQSNR
KFYVVMWKQTEQEFWLKTPFAATAHSGVQLKVVNSDTGPGELLRNALWHTGDTPNQVRLL
WSDPVSAGWKDKTAYRWVLRHRPEKGYIRIEFYEGNVLIADTGTIVDKTIRGGRLGVFCF
SQESIIWSNLHYQCNASK
Nucleotide sequence
Length: 2,594
>Moocci.CG.ELv1_2.S640108.g28706.01.t
TGTCGTTCAAAGTTAAAAACATGGAGGACGAAGAGCTGATGGTTTCAAATTTCCGACACA
TAAACATATTCGATGGTCAGTGGCACACTCTTCTGTTGCATGTCGTCATGAATGAAACAA
ACTTGGCAAATGTCCAGTTGCTGGTGGATTGCGTTGAAGTTGGAAAGGATGAAATTTCAC
CGTGGTTAGGAAACGACTTGGCGGAAAATTCGACCAACCTTTCATTGAAAATTGGACATA
AGAGCTCCGTTGATTCAAGGAGTCACATACGGCGAGCTACTTTGGTGTACGACGAACAAC
TGCCCCTGGTACGACGGAATTACGGAGGATTTTGTCCACAATCGGACAAATATTCATCCG
CCGATCCTAACGTTTACGCGTTTAACACAATCGAAGCCAACCCACTTTCAGAACTTTCAG
TTCAAATTGCAGACTTGACTTCGGTTTTGCACGAAATCCAAGTGGCAATCAAATTACAAA
CTTCGGAAACGAAGGATTTACGGAGCGCCATTCAACAATGTTCATTGTGTGGCCGATCGC
CATTGCCTCCGCATTATGTGAGCCCGAAACAACCGGTTGTCGATCAACCTGAAGTTCCCA
CCGTTAACGTGGTCAAATGTTCCACGAATCCCTGCTACCAGGGTGTCAACTGTACTGACA
CAGAGGAAGGATTCGTTTGTGGATCATGTCCCGAAGGATTTGCAGGAAACGGTACCCACT
GCAGTGATGCGAACGAATGTGGGGCGAACAATCCGTGTTCTGATATTGCCGGATGCGAAA
ACACCCCTGGTGGATACTTCTGCAACCCCTGCCCCCAAGGTTACACACAGTCTTTCCAGG
AACAGTTTTTAAATGGACTGTTTATTCAAAAGCAGATATGCACAGACGAAGATGAATGTA
TTTTTGGAAATGGAAACTGTGTTCCAAACTCACACTGCATCAATACACAAGGATCTTTTA
CATGTGGGAACTGTTTGCAAGGTTACATCGGAAATCAGACAGTCGGGTGTAAAAAATCTC
GACAATGCGAAGACGGAGGCTTAAATCCGTGTCACGAACACGCACACTGTCTGGTGATTA
ACAAAGGCGAGGATTATGCATGCGAGTGCGAAATTGGATACGCGGGAAACGGGTTCACGT
GCGGATTTGACTTGGACCTGGATAGCTTTCCCGACGAAAACCTCCCGTGTAGCGAGAAAA
AGTGCTTGAAGGACAACTGCCCGAGCGTCCCCAACAGTGGACAGGAGGATTACGACCTCG
ATGGCGTGGGGGACGCGTGCGACAGTGACGCTGACAACGATGAGATTATCAATGAGCACG
ATAATTGCGTGCTCATGCCCAATCCATTTCAACAGAATTCGGACAACGATCCTTTTGGTG
ACGCCTGTGACAACTGCCCGAACGTCAATAACCCGAAGCAAACCGACAGTAACAACAATG
GTGAAGGTGATGAATGTGACAATGATAAAGATGGCGACGGTGTGTCCGATGAGTTGGACA
ACTGCCCATTAGTACCGAATTATTCACAAGATGACGTGGATGGCGATAGAGTAGGTGATG
CATGCGACAACTGCCCGAATCTCAGCAATCCTCTTCAGATGGACAGCGATGATGACTACA
TAGGAGATGCATGTGACTCTGATGTTGATTCTGACGGTGACGGCATACAAAATGATCGAG
ATAATTGTCCCACAGTAATTAACAGCGCACAATTGGACACTGATAATGATGGTATCGGAG
ACTTGTGTGACGAAGATGACGACGGTGATGGTGTGCCTGATTACGGAGGAATAATGGGGA
GCGATAATTGTCGCCTAATTCATAACCCCGACCAGTTCGACCAAGACAGAAATGGGGTGG
GGGATGTTTGTGAAGGGGATCAGGATGGGGATGGGGTTAATGATTGGTGGGACACTTGCC
CGTTCAACCGCGATATTCGGCTTACTGATTTCCGCGCATTTCAAACCGTCAGCTTGGAGC
CAATCAGCGAAGAGACAATTCAGCCATTTTGGATGGTGTTAGACGAAGGACGTGAAATTG
TTCAGACAAAAAACAGTGATCCGGGGTTGGCAATCGGTTATGCATCTTTCAATGGAGTGG
ATTTCAGCGGAACTTTTTTCGTCAACACAGCAGCTGACGACGATTACGCTGGGTTTCTGT
TCAGTTACCAAAGCAACCGAAAGTTCTACGTTGTTATGTGGAAGCAAACGGAACAAGAGT
TTTGGTTGAAGACTCCTTTCGCAGCAACTGCGCATTCAGGAGTCCAATTAAAAGTCGTGA
ACTCCGACACAGGGCCCGGAGAGCTGCTCCGAAACGCTCTTTGGCACACTGGCGACACAC
CAAACCAAGTTAGATTACTATGGTCGGATCCGGTGAGCGCCGGATGGAAGGATAAAACTG
CTTATAGATGGGTATTGCGTCATCGACCTGAAAAAGGCTACATCAGAATCGAATTTTACG
AGGGAAACGTTTTAATTGCTGACACCGGAACAATAGTAGATAAAACAATCAGAGGCGGGC
GATTAGGAGTATTTTGTTTCAGTCAAGAGAGCATTATTTGGTCAAATCTTCATTACCAAT
GTAACGCTTCTAAA
| PANTHER |
Thrombospondin (IPR037349) - T[2-856] 0.0 |
| Pfam |
Thbs/COMP_coiled-coil (IPR024665) - T[131-171] 1.5E-6 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[196-235] 9.557 - T[236-274] 7.319 - T[289-328] 7.204 - T[332-375] 11.364 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[196-235] 0.019 - T[236-274] 2.6E-4 - T[289-337] 1.1E-6 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[197-336] 8.47E-5 |
| SMART |
EGF-like_dom (IPR000742) - T[199-235] 0.076 - T[239-288] 30.0 - T[292-331] 0.19 - T[335-375] 0.11 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[236-261] . - T[289-315] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[236-269] 5.1E-5 - T[289-326] 3.8E-7 |
| Pfam |
EGF-like_dom (IPR000742) - T[342-370] 7.5E-5 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[361-374] . |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[364-456] 1.2E-20 - T[457-515] 9.8E-20 - T[516-642] 1.3E-40 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[375-457] 7.45E-11 - T[445-516] 3.01E-14 - T[514-638] 1.22E-29 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[376-408] 9.301 - T[409-444] 16.841 - T[445-467] 11.088 - T[468-503] 15.844 - T[504-526] 12.165 - T[527-564] 14.469 - T[565-605] 12.864 - T[606-641] 12.706 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[409-444] 4.4E-10 - T[468-503] 2.8E-11 - T[503-526] 0.0017 - T[528-564] 1.3E-8 - T[566-605] 2.0E-7 - T[607-636] 1.9E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[642-855] 1.42E-96 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[645-858] 97.048 |
| Pfam |
Thrombospondin_C (IPR008859) - T[660-855] 2.9E-93 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 50.64 % | 765 | 0 |
| TSP3_HUMAN | 50.465 % | 774 | 0 |
| COMP_HUMAN | 54.047 % | 726 | 0 |