- Transcript 'KH2012:KH.L36.2.v1.A...' >
- Transcript 'KH2012:KH.C3.201.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S64...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S640567.g28793.01.t
Possible name(s)
COMP; THBS1; THBS2
Gene model
Location
S640567 [2,977 / 9,908]
Amino acid sequence
Length: 641
>Moocci.CG.ELv1_2.S640567.g28793.01.p
MVTHDSNQPKGFGIMYASKNKQVCEATNPCETPGVCPEHSKCIHLDPFMTPNFICKCDPG
YASCPECKGLVCAEDTDMDGWPDMVVSCMKDGINVTCDKDNCPTLPNSGQENTDGDEMGD
GCDPDDDNDGVPDGRDNCPLKKNPKQHDSDHDRVGNACDNCVDVINPGQLDTDGDGLGDE
CDGDIDGDGIRNEADNCVFVHNTAQVDRDGDRVGDSCDNCVDISNPDQRDSDSDKVGDLC
DTNQDRDHDGIQDDLDNCIDIPNASQKDHDKDGLGDACDGDDDNDGIPDELDNCKLIANP
DQLDLDGNGVGDVCEFDKDGDGVNDIEDVCPNNALISNTDFRKLDLVRLDPKGVAQRDPN
WVIRHRGREVIQTVNCDPGLAIGTFYVNTGTDDDYAGFVFGYQSSSKFYVVMWKQVTQSY
WKSYPTKALGMSGLQLKVVNSTTGPGEALRNALWHTGDTKGQVRTIWSDHLTRGWKDHKA
YRWMLNHRPGTGLIRITMYEGKELLVDSGDIYDRTHLGGRVGMFIFSQEMVIFSDMEYKL
NRFTRFAKFSQISYGFAARPIVKSRDWSYEKKACNRYYLPCCWPMFRENKLTKSKQIKLK
KILLISERVLVARYQINVPELRTILLNQVNLNNKKAFNNLT
Nucleotide sequence
Length: 1,926
>Moocci.CG.ELv1_2.S640567.g28793.01.t
ATGGTCACTCACGATAGCAACCAGCCAAAAGGATTCGGGATTATGTATGCGTCAAAAAAT
AAGCAAGTTTGCGAAGCGACAAACCCATGTGAGACCCCAGGGGTATGCCCAGAACATTCT
AAATGCATACACCTAGATCCTTTCATGACACCTAACTTTATCTGCAAGTGTGACCCGGGT
TACGCAAGTTGTCCAGAATGTAAAGGACTCGTATGTGCTGAAGATACTGATATGGATGGT
TGGCCAGACATGGTTGTCAGCTGCATGAAAGACGGAATTAATGTTACATGTGATAAGGAC
AACTGCCCAACACTGCCAAACAGCGGACAAGAAAACACAGATGGAGACGAAATGGGTGAT
GGTTGTGATCCCGATGATGATAACGACGGCGTCCCTGATGGCAGAGACAACTGCCCGCTT
AAAAAGAACCCAAAACAGCATGATTCTGACCACGATAGAGTCGGAAATGCTTGTGACAAC
TGCGTGGACGTTATAAATCCTGGACAATTGGACACAGATGGCGACGGTTTGGGCGACGAA
TGTGACGGGGATATTGATGGTGATGGAATTCGAAACGAAGCTGACAATTGTGTATTTGTC
CATAACACTGCACAAGTTGACAGAGATGGGGACAGAGTAGGAGATAGCTGTGACAACTGC
GTTGACATTTCTAATCCTGATCAGCGTGATAGCGATAGCGATAAGGTTGGCGATCTTTGT
GACACAAATCAAGACAGAGATCACGACGGTATACAAGATGATCTAGATAATTGCATTGAC
ATTCCTAACGCATCGCAGAAAGATCATGATAAAGATGGCCTAGGTGACGCATGCGACGGG
GATGATGATAATGATGGTATTCCTGATGAACTTGATAATTGCAAACTTATTGCAAACCCC
GATCAATTGGATCTTGATGGTAATGGCGTGGGAGATGTATGTGAATTTGACAAAGATGGA
GACGGAGTTAATGACATTGAGGACGTATGCCCCAACAATGCACTCATATCCAACACCGAT
TTCAGAAAATTAGACTTGGTTAGATTAGATCCAAAAGGTGTGGCCCAAAGAGATCCTAAC
TGGGTTATCAGACATAGAGGAAGAGAAGTCATCCAAACAGTTAACTGTGATCCTGGTCTT
GCTATTGGAACTTTCTACGTCAACACTGGCACTGACGATGATTATGCAGGCTTTGTGTTT
GGTTATCAATCCTCAAGCAAATTCTATGTCGTTATGTGGAAACAAGTCACACAATCCTAC
TGGAAATCATACCCAACCAAAGCCCTTGGAATGTCTGGTCTTCAACTTAAGGTTGTCAAT
TCGACCACCGGTCCAGGAGAGGCTCTCAGAAATGCTTTGTGGCACACTGGAGATACCAAA
GGACAAGTTAGAACGATTTGGTCAGATCATTTAACACGAGGCTGGAAAGATCATAAAGCA
TACAGATGGATGTTAAACCACAGACCTGGAACTGGTTTGATAAGAATCACAATGTATGAA
GGTAAAGAACTTTTGGTTGATTCTGGGGACATCTACGACAGAACGCATCTAGGAGGAAGA
GTGGGAATGTTTATCTTCTCACAAGAGATGGTGATCTTCTCCGACATGGAATACAAATTA
AATCGATTCACACGATTTGCGAAATTCTCGCAAATAAGCTACGGTTTTGCTGCGCGCCCA
ATCGTGAAATCACGTGATTGGAGCTACGAGAAGAAAGCTTGCAATAGATACTATTTGCCT
TGTTGCTGGCCTATGTTCAGAGAGAATAAATTAACAAAAAGCAAACAAATAAAACTAAAA
AAAATATTACTTATTAGTGAAAGAGTTTTAGTTGCAAGGTATCAAATTAATGTACCCGAG
TTAAGAACTATTCTTTTGAATCAGGTTAACTTAAATAACAAAAAAGCATTTAATAATTTA
ACTTAA
| PANTHER |
Thrombospondin (IPR037349) - T[6-540] 1.7E-258 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[26-65] 8.758 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[63-159] 8.9E-23 - T[216-339] 5.2E-43 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[74-110] 12.669 - T[111-146] 16.531 - T[147-169] 10.383 - T[170-205] 15.868 - T[206-228] 11.052 - T[229-266] 14.305 - T[267-302] 17.917 - T[303-338] 13.94 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[74-159] 7.59E-14 - T[147-219] 2.09E-15 - T[216-337] 3.92E-33 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[113-146] 8.6E-8 - T[171-205] 5.2E-10 - T[229-266] 2.6E-9 - T[267-302] 2.9E-11 - T[304-335] 7.8E-10 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[339-541] 9.49E-91 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[342-545] 83.36 |
| Pfam |
Thrombospondin_C (IPR008859) - T[356-539] 7.2E-79 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP1_HUMAN | 60.623 % | 600 | 0 |
| TSP2_HUMAN | 59.307 % | 571 | 0 |
| COMP_HUMAN | 51.789 % | 488 | 3.55E-164 |