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  1. Transcript 'Moocci.CG.ELv1_2.S65...'

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S650825.g30309.01.t

Possible name(s)

SCN1A; SCN3A; SCN4A

Location

S650825 [51,308 / 56,269]

Sequences

Amino acid sequence

Length: 285

>Moocci.CG.ELv1_2.S650825.g30309.01.p
MMSLPALFNIGSLLFLVIFIFAILGMSQFAYVQKTGGIDELLNFETFPNSFLVLFQVSTS
EGWNTFIDPILKDTPPHCDPTIHNPDGLGNGNCGNYTLGTLYFITFVLMTFLIVINMYIA
IILENFEVATRESAEPLTADDFEQFFEVWQRYDDRLTQYIAFEQLQDLLHHLDFPLRVPY
PNTAFIAVSEMRITLDGKIHCLEVVIALIKKVLGDPPELNQFKETMLESFKLKSGAKDAV
DPDDTISTMEFVRRLRAAIIIQREREVLRDYNSASNSPKIIHSSN

Nucleotide sequence

Length: 1,665

>Moocci.CG.ELv1_2.S650825.g30309.01.t
GCAATACTCAAGTTAATTGGTCTTCGTCTTTATTACTTCACTATTACTTGGAATGTTTTT
GACATTGTTGTTGTCGTAGTTTCACTTGTTGCCAGCGCTCTCAGTGACTTGGTGGCACAA
TATTTTCTTCAGCCAACGCTTCTCAGAATCATTCGACTTTTCCGTGTTACCAGAATTCTT
AGATTGATCCGAGAAGCAAAGGGCATTCGCACATTATTATTTGCACTTATGATGTCACTA
CCTGCGTTATTCAACATTGGAAGTTTGCTTTTTCTTGTCATTTTCATCTTTGCTATATTG
GGGATGTCACAGTTTGCCTACGTACAAAAGACTGGAGGAATCGATGAATTACTCAACTTT
GAAACTTTCCCCAACTCCTTCTTGGTTTTATTTCAAGTGTCAACATCTGAAGGGTGGAAC
ACTTTTATAGACCCCATATTAAAGGACACCCCTCCCCATTGTGACCCAACAATACATAAC
CCTGATGGGCTTGGCAATGGAAATTGTGGAAATTATACTTTAGGCACTCTATATTTCATT
ACATTTGTACTAATGACGTTTTTAATCGTGATAAACATGTACATTGCAATCATCCTCGAA
AATTTCGAAGTTGCAACTAGGGAGAGTGCAGAACCATTAACTGCAGACGATTTTGAACAA
TTTTTTGAAGTTTGGCAGCGGTATGACGATCGTTTAACACAATACATCGCTTTTGAGCAG
TTACAGGATCTTCTTCATCATCTTGACTTTCCTCTTCGAGTTCCATATCCTAACACTGCG
TTTATTGCTGTATCAGAAATGCGTATTACATTAGATGGAAAAATTCACTGTCTGGAAGTT
GTCATTGCTCTTATTAAAAAAGTTTTGGGAGACCCTCCTGAATTAAATCAGTTTAAAGAG
ACAATGTTGGAGTCATTTAAACTGAAAAGTGGTGCTAAAGATGCAGTGGATCCAGATGAT
ACAATTAGTACAATGGAATTTGTGCGGAGGCTGCGGGCGGCGATTATAATTCAACGTGAG
CGTGAAGTTCTAAGGGACTACAACTCAGCTTCAAACAGCCCAAAAATAATACATTCTTCC
AATTGAATTATTAAAGGAATCAGATCACTTTTTAGACAAAACTAAGAATTATAGTAATAA
AATGACTTATCAAATACACCAGCTCAAATTATGAATTTTACATTAACTAAATTTCCACAG
TTTATCTCGTTATAGAAATTTTTGTATTATTTTGTTTGTTTTAACGAAGTAAGATTAAAA
TATTTTACAAAAATTAGTTCCAAGTTTACATAGTGTTAATGCATCTAATGTATTCATTGT
TTTTTATTGATTATTATATTTATACAAGTTTGATAACTTTTACTATTTGCAAATTCCTTT
GTCAATTGTTTCTTATATTTAACCTATTTTATTACTTATTATTCTACTGTGAACTGTGCC
TTTCTCCGATTACTTGTATATTGTACAATATTAGGTGTTATTTTTACTGAACAATTTTAG
CTACGTTCAGTCTTGTTTAATCATATATGGTGGAAATTTTCTATGTGACATGACATTTAT
TATAACCACATTTTATCACGTCACAATCTTCTATTGTTTCTGTTATTGTTATTAAAAATT
GCAAATTTTATTTAAACTTATTAAAAACTATTTTTCTTATAAATA

InterProScan

Pfam
Ion_trans_dom (IPR005821) - T[1-133] 1.7E-21
PRINTS
Na_channel_asu (IPR001696) - T[105-124] 3.0E-11 - T[140-153] 3.0E-11
SUPERFAMILY
EF-hand-dom_pair (IPR011992) - T[132-266] 1.2E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN1A_HUMAN 45.704 % 263 7.24E-80
SCN3A_HUMAN 43.403 % 265 1.13E-80
SCN4A_HUMAN 49.049 % 268 5.32E-82