- Transcript 'Haaura.CG.MTP2014.S3...' >
- Clone 'cicl035b05' >
- Transcript 'Cisavi.CG.ENS81.R558...' >
- Transcript 'Moocci.CG.ELv1_2.S65...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S651786.g30474.01.t
Possible name(s)
PCDH18; PCDHA2; PCDHB11
Gene model
Location
S651786 [47,672 / 51,549]
Amino acid sequence
Length: 926
>Moocci.CG.ELv1_2.S651786.g30474.01.p
MNYSAIVIILSLSGTCLSQTLKKTFHIHEEIPQGSVILGNISDLFNLHPETDKDSFKLLS
HVIATSNDGAKYKTKDLNANNWVEMDDVASGQVKLGRRIDRDDVCGKVKICCLQIQVIRF
PQQQLLEIFVFVDDINDHFPEFPQNKISFYVNENTVVGETFNLDAYLATDGDSGVNGEVR
YSLTENPYFEIKHYINTGGLSHLELVLVQSLDYESIKEIDLTLTSSDRASPSLNSTANIK
IIVADVNDNRPIFLKDKYSVSLKENQLPYQEIIQVKAVDADSGPFGAIRYYISKRNTRTV
KKLLSVDPNSGKVMLKEKLDRERDNGMRVLIVARDSNASGQRDSETYLVINVEDINDNAP
LINVNYVVSSKLDTAYVNENAAIGTYIARVSATDADDGNNGRVTTIISSKAKKISDIELT
KDMEIDIYFILNTDGFIETLEPLNLESCSEYVILISACDHGEVSRCAEKTINIVILDVNE
YAPKFEIPTYHVSLKENVPTGTEVVTVNAIDRDNIYGDALSLNMHDQIIRSRNGEITYSI
VGGGRGMFTVDSKTGRISTLRKLDREVKNEWKLTILAEDGGIPKPLESICDVHVKVDDIN
DNLPYFINPAFNNSLVYASLNGNHLVTRLRAKDADTDENANLKFNLISTLESEEGFNFQA
YQLSKNKNYLSFMHKKNAKESFVLNPVTGDLTMNTELIHPGLKHLQVEVCDFGFPKLCSN
ILLRVMVTKSPEEYDDISSELIILAACLGTLAVLLLFAIPLVVLRCKKENKKIKSYGAKR
SVDKNSRCETFIQQQSILKQEMSSFLRENELENSFMLPERNNRYNSWTEEKSKNIPTISS
PSDGDSGRGDSEPENSRSRIHSNNSSSIRDSSSTLSKTCTDQCLHYGHSDECWMPKTIEH
VESKLSNINQFLKENSQSKLPTEALD
Nucleotide sequence
Length: 2,781
>Moocci.CG.ELv1_2.S651786.g30474.01.t
ATGAATTACTCCGCTATTGTGATTATTTTGTCTCTATCTGGAACTTGCTTATCCCAAACG
TTAAAGAAGACTTTTCACATACATGAAGAAATACCTCAAGGTTCCGTGATATTAGGAAAT
ATCTCAGATTTGTTCAATTTGCACCCTGAAACAGACAAAGACTCTTTTAAATTGTTGAGT
CATGTTATAGCAACATCCAATGACGGTGCAAAATATAAGACCAAAGATTTAAACGCTAAT
AATTGGGTTGAGATGGACGACGTTGCGAGTGGCCAAGTCAAACTAGGACGAAGAATTGAT
CGCGATGATGTTTGTGGAAAAGTTAAAATTTGCTGCCTTCAGATACAAGTAATTCGATTT
CCGCAGCAGCAGCTACTTGAAATCTTTGTATTTGTTGACGATATTAATGACCATTTTCCA
GAGTTTCCGCAAAACAAAATTTCATTTTATGTAAATGAAAATACAGTTGTTGGTGAGACG
TTTAACCTGGACGCTTATCTTGCTACTGATGGCGACAGTGGAGTTAATGGAGAAGTCCGA
TATTCTTTAACAGAAAATCCATATTTTGAAATAAAGCATTATATCAATACTGGGGGATTA
TCCCACCTTGAACTAGTACTCGTTCAAAGCTTAGACTATGAATCAATAAAAGAGATTGAT
TTGACATTAACATCATCCGACAGAGCATCTCCTTCTCTAAACTCTACTGCTAATATAAAA
ATTATTGTCGCTGATGTCAATGACAACAGACCTATATTTTTAAAAGATAAATACAGCGTA
TCCCTTAAAGAAAATCAGTTGCCATATCAAGAAATCATACAAGTGAAAGCTGTGGACGCT
GATTCGGGACCGTTTGGTGCTATTCGATATTACATATCAAAAAGAAACACCAGGACAGTG
AAAAAATTGTTGTCAGTTGATCCGAATTCAGGAAAAGTAATGTTAAAGGAAAAACTTGAC
CGTGAACGTGATAATGGAATGCGTGTCCTGATCGTGGCAAGAGATTCTAATGCATCTGGT
CAACGCGACAGTGAAACATATCTCGTGATAAACGTTGAAGACATAAACGACAACGCACCT
TTGATTAATGTAAACTACGTTGTATCTTCGAAACTTGACACTGCATATGTTAATGAAAAC
GCCGCAATTGGAACCTACATTGCTCGAGTATCGGCCACCGACGCAGATGATGGCAATAAT
GGACGTGTGACCACAATTATCAGTTCAAAAGCAAAGAAAATTTCAGATATCGAATTGACT
AAAGATATGGAAATTGATATATATTTCATATTGAACACTGATGGATTCATTGAAACATTG
GAACCATTGAACCTTGAATCATGTAGTGAATACGTTATTCTTATATCAGCATGCGACCAC
GGTGAAGTTTCAAGATGCGCTGAAAAAACTATCAACATTGTTATATTGGACGTTAATGAG
TATGCTCCCAAGTTCGAAATTCCAACTTATCACGTATCACTAAAAGAAAACGTACCTACA
GGTACAGAAGTTGTTACAGTTAATGCCATTGACAGGGACAATATTTATGGCGACGCTTTG
AGTTTAAATATGCACGACCAAATTATTCGTTCGCGAAATGGAGAGATTACTTACAGTATC
GTTGGTGGAGGAAGAGGAATGTTTACAGTAGATTCCAAGACAGGAAGGATTTCAACTCTA
AGAAAACTTGATCGCGAAGTTAAAAATGAATGGAAGCTGACAATATTAGCCGAAGATGGC
GGAATTCCCAAACCACTGGAAAGCATTTGTGATGTGCATGTCAAAGTAGATGATATTAAC
GACAATCTCCCGTACTTCATAAACCCAGCCTTCAACAATTCACTTGTTTACGCAAGTTTG
AATGGAAACCACTTAGTTACAAGACTTCGTGCTAAAGATGCTGATACTGACGAAAACGCA
AATCTTAAGTTTAATTTAATTTCTACCTTGGAAAGTGAAGAAGGATTCAATTTTCAAGCT
TACCAGCTATCCAAAAATAAGAACTATTTAAGTTTCATGCACAAAAAAAACGCTAAAGAA
TCTTTTGTTTTAAATCCTGTCACAGGAGATTTAACAATGAACACGGAGTTGATACATCCC
GGTTTAAAACATTTACAAGTTGAGGTTTGTGATTTCGGATTTCCAAAACTGTGTTCGAAT
ATTTTACTCCGAGTAATGGTTACGAAATCTCCAGAAGAGTATGATGACATATCGTCTGAA
TTGATTATTCTGGCAGCATGTCTTGGTACATTAGCTGTACTTTTGTTGTTTGCCATTCCT
TTGGTTGTATTGAGATGCAAAAAAGAAAATAAGAAAATAAAATCCTACGGAGCTAAAAGA
TCTGTTGACAAAAACAGTCGATGTGAAACATTTATTCAGCAACAAAGTATTTTAAAACAA
GAGATGTCGTCTTTCCTGAGAGAAAATGAATTGGAAAACAGTTTCATGCTGCCTGAAAGA
AATAACAGATATAATTCATGGACTGAAGAAAAATCGAAAAACATTCCTACAATATCATCA
CCGTCAGATGGCGATAGTGGGAGAGGAGACAGTGAGCCAGAGAATTCTCGTTCAAGAATT
CATTCAAACAACTCTTCCTCCATTAGAGACAGTAGTTCAACCCTGTCAAAAACGTGCACG
GACCAATGCCTACATTACGGTCATTCAGATGAGTGTTGGATGCCCAAAACTATTGAACAC
GTGGAATCAAAATTGTCAAATATAAACCAGTTTTTAAAAGAAAATTCACAATCAAAGTTA
CCCACAGAAGCACTTGATTAA
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[135-246] 7.99E-18 - T[241-368] 6.57E-24 - T[350-473] 3.71E-16 - T[473-609] 1.11E-24 - T[599-728] 6.42E-10 |
| Pfam |
Cadherin (IPR002126) - T[148-243] 1.6E-8 - T[258-353] 4.0E-16 - T[374-475] 1.0E-10 - T[490-596] 5.2E-19 |
| SMART |
Cadherin (IPR002126) - T[166-251] 2.8E-20 - T[275-360] 1.6E-17 - T[390-483] 9.4E-15 - T[520-604] 1.2E-22 - T[629-731] 1.1 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[241-251] . - T[350-360] . - T[594-604] . |
| PRINTS |
Cadherin (IPR002126) - T[302-321] 6.2E-29 - T[368-397] 6.2E-29 - T[450-462] 6.2E-29 - T[464-483] 6.2E-29 - T[483-496] 6.2E-29 - T[553-579] 6.2E-29 - T[588-605] 6.2E-29 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDBB_HUMAN | 29.224 % | 248 | 3.79E-70 |
| PCD18_HUMAN | 27.771 % | 252 | 5.26E-70 |
| PCDA2_HUMAN | 31.351 % | 249 | 1.06E-69 |