- Transcript 'Moocci.CG.ELv1_2.S65...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S651786.g30475.01.t
Possible name(s)
PCDH11X; PCDH11Y; PCDH18
Gene model
Location
S651786 [55,138 / 67,142]
Amino acid sequence
Length: 1,238
>Moocci.CG.ELv1_2.S651786.g30475.01.p
MSLENCGGKWIYRELLSGMDNKSMGMQTTLLSFFVILLPFAFSSMQTLTTNIHMKEELPK
GQYINNLVQMFNLTSRPKQDKFKVLSQKVVSSQDGIKFSRQIRTNQVWVSIDSASGDITL
ERRINRDSLCVSALCALELQVIKLPQQLLLEFNIIVDDINDNSPVFPHDVIDISIPESWA
VGESYNLDAYMAKDKDLGTNGKIQYKLTENSYFGLKQYSGKEGTKHLQIFLINKLDYETK
SEIDLTLVASDGGLPTLSSSSTLRISIADVNDNRPVFQQEKYTVTLKENQLPGQEIVKVQ
AVDADSDSFGRVQYYLSKRNDRQVEELLSVNAESGEVTLKEKLDRERDNGMRILIEARDS
NPSDQRVGETYLVINIEDINDNAPLINVNYVVSSKLDTAYVSENAAIGTYIARVSATDAD
DGNNGRVTVAITSSPANDRKSPDQKTTPIAKNFKLNSNGFIETLEEMDRETCNHYLVTIS
ACDEGNTPRCSSKTLDVVVLDVNEYAPKFIKPTQKVLLREDVNVGIDVATVHAEDKDNAN
GQAMTTNSNDEIVISKNGDITYSITSGGRGVFAIDPKSGRISLVRQLDREVKSEWILKVS
AMDGGIPVALESTCEVIIKVVDVNDNRPFFVNPSINNSLVYASINRKEIITQLRAVDYDD
EKYTHLRYHILSTDDISENMEFSQPSRQATFHTINQTARGLLAQYRNKDFILNPISGELH
LNLTRANSSMRLGLKRLKIQVCDSHVPKLCSNIVLRVMVTKEVILTNDVDYNKVSSSPDL
VILAVSLGSVAVLLIVLIAVVVIKCTRQNKEIRSYNIPTETNRADYSVGKSCGCDDVTSN
KDDIDSEKCPLTPETKVSTGSQRESLQSDIEDNNKSHVNLDLLSPSAHLMKKLEKLPSSH
SDGDSGRGDSEPDSSCFHASDRKGSILSPRSKMNNRMSLMCSEQCLKFGHSDKCWMPKSD
NITSSRCSISSIKNEKVYNWQRLKPKYYESPTHNEAIVRSGHSDSDLLSHTRQPPQPQMK
NQILQSFQFQQPDQTINDASMRPSSLSLLQRRYSASVISHKNTSSPAFVGHHRESQAPRS
CQSTPCEFLPRRGNGNAQLNTVYEDTNHSPSRNTQQQPLKYLHDRYRVSQPSITITQSQN
INNSIVYSINKPPLSSFDNNYRTNHNIEQQNSFLPETDKPPSGVLGKFGDIRRNRKPVVQ
TKFFRITRLNAKAVFKREVKLSDSDGCKPYIQYHVLAL
Nucleotide sequence
Length: 3,717
>Moocci.CG.ELv1_2.S651786.g30475.01.t
ATGTCCTTGGAAAACTGTGGAGGAAAGTGGATATATCGAGAGCTTTTGTCTGGAATGGAT
AATAAATCAATGGGAATGCAGACGACTTTGCTATCGTTTTTTGTCATTTTATTACCTTTT
GCATTCTCGTCCATGCAAACGTTAACGACCAATATACACATGAAAGAAGAATTGCCCAAA
GGTCAATATATCAACAACCTTGTGCAAATGTTTAACCTTACTTCGAGACCGAAGCAAGAT
AAATTTAAAGTTCTTAGCCAGAAAGTAGTGTCATCACAAGACGGAATTAAATTTTCCAGA
CAGATTAGAACCAACCAGGTGTGGGTGTCTATCGATTCTGCTTCTGGTGATATTACTCTG
GAACGAAGAATAAACCGAGATTCTCTTTGTGTTTCAGCACTTTGCGCTTTGGAGTTGCAA
GTAATCAAACTGCCACAACAATTGCTACTTGAATTTAACATAATAGTAGATGACATCAAC
GATAACAGTCCAGTATTCCCGCACGATGTGATCGATATTTCTATTCCAGAGAGCTGGGCA
GTTGGAGAATCGTATAACTTAGATGCATATATGGCAAAAGATAAAGATCTCGGGACAAAT
GGCAAGATCCAGTACAAGCTGACTGAGAATTCTTATTTTGGACTAAAACAATATAGTGGG
AAAGAGGGAACAAAGCATTTGCAGATATTTCTGATTAATAAATTAGATTACGAAACAAAA
TCAGAAATTGACTTAACTTTGGTAGCTTCTGATGGGGGATTGCCCACTCTTAGCTCAAGT
TCCACATTAAGGATCAGTATTGCAGACGTTAACGATAACAGACCCGTATTTCAGCAAGAG
AAATACACAGTGACCCTAAAGGAAAATCAATTGCCGGGTCAGGAAATCGTTAAAGTTCAA
GCTGTGGACGCAGATTCTGATTCTTTTGGAAGAGTCCAGTATTATTTGTCTAAAAGAAAT
GATCGACAGGTTGAAGAATTGTTATCAGTTAATGCAGAAAGTGGAGAAGTGACTTTAAAA
GAAAAACTCGACAGGGAAAGAGATAATGGCATGCGTATTCTAATAGAAGCGAGGGATTCC
AATCCATCGGACCAAAGAGTTGGTGAAACATATCTCGTGATAAACATTGAAGACATAAAC
GACAACGCACCTTTGATAAATGTAAACTACGTTGTATCCTCGAAACTTGACACTGCATAT
GTTAGTGAAAATGCAGCCATCGGAACCTACATTGCTCGAGTATCGGCTACTGATGCAGAC
GATGGCAACAATGGACGAGTAACCGTTGCCATTACATCATCTCCCGCAAACGATAGAAAA
TCACCGGATCAGAAAACGACCCCAATCGCTAAAAATTTCAAGCTCAATTCAAATGGTTTT
ATTGAGACTTTGGAAGAAATGGACCGTGAAACATGCAACCATTACTTAGTAACAATAAGT
GCGTGTGATGAAGGAAACACACCAAGATGTTCTAGTAAAACGTTGGATGTGGTGGTCTTA
GACGTTAATGAATATGCTCCCAAATTTATTAAACCTACGCAAAAAGTGCTTTTACGTGAA
GACGTCAATGTCGGAATCGACGTTGCAACTGTACATGCGGAAGACAAGGATAATGCTAAT
GGACAAGCCATGACCACTAACTCGAATGACGAAATTGTCATTTCCAAAAACGGTGACATC
ACATACAGTATAACGAGTGGGGGTAGAGGAGTATTTGCTATCGACCCAAAATCCGGTCGA
ATTTCTTTGGTTAGGCAACTCGATAGAGAAGTCAAAAGTGAATGGATTCTCAAAGTCAGT
GCAATGGATGGAGGCATTCCGGTTGCTCTTGAAAGCACATGTGAAGTAATTATCAAAGTG
GTGGATGTAAACGACAATCGACCGTTTTTTGTAAACCCTTCCATCAATAATTCTTTAGTT
TATGCCAGTATTAACCGTAAAGAAATAATCACGCAACTTCGGGCCGTCGATTATGATGAT
GAGAAATACACACATCTGAGATATCATATTTTGTCCACTGATGATATCTCTGAAAATATG
GAATTTTCTCAGCCAAGTCGACAAGCAACTTTTCATACAATTAATCAAACTGCGAGAGGA
CTTTTAGCTCAATACCGTAACAAGGATTTCATTCTTAATCCTATATCGGGAGAATTACAT
CTTAATCTTACAAGGGCAAACAGTTCAATGCGTCTTGGATTAAAGCGCTTGAAAATTCAG
GTTTGTGATTCGCACGTTCCAAAGTTATGTTCCAATATAGTGTTACGTGTTATGGTGACA
AAAGAAGTAATCCTCACTAACGATGTAGATTATAATAAAGTATCAAGTTCGCCAGACCTT
GTGATTCTCGCAGTTTCCCTTGGCTCGGTGGCGGTGCTCCTTATAGTGCTAATCGCAGTT
GTTGTTATCAAATGCACAAGGCAAAACAAAGAGATTCGATCCTATAACATTCCAACAGAA
ACAAACCGAGCGGATTATTCCGTGGGAAAATCTTGCGGGTGTGATGACGTAACATCTAAC
AAGGATGACATTGATTCTGAAAAGTGTCCACTTACACCAGAGACCAAAGTCAGTACTGGA
TCACAGCGAGAAAGTCTTCAATCCGATATTGAAGATAACAACAAAAGTCACGTCAACTTA
GATCTACTTTCACCATCAGCACATCTTATGAAGAAATTGGAGAAGTTACCATCGTCACAC
TCAGACGGGGACAGTGGAAGAGGTGACAGTGAACCTGACAGTTCCTGCTTCCACGCATCA
GACCGAAAAGGATCCATTTTATCCCCAAGAAGTAAAATGAATAACCGAATGAGTTTAATG
TGTTCAGAACAATGTTTAAAGTTTGGACATTCTGACAAGTGCTGGATGCCAAAGTCTGAT
AACATAACGTCTTCAAGGTGCAGCATTTCTTCAATTAAAAATGAAAAGGTGTATAATTGG
CAAAGATTAAAGCCAAAGTATTATGAATCTCCTACCCACAACGAAGCTATCGTTCGAAGT
GGTCATAGCGATTCGGATTTGTTGAGCCACACAAGGCAGCCACCCCAACCCCAAATGAAA
AATCAAATATTGCAATCATTTCAGTTCCAACAACCAGACCAAACAATCAATGACGCATCT
ATGCGTCCATCCTCTTTAAGTTTGTTACAAAGGCGCTATTCTGCTTCAGTGATAAGCCAC
AAAAACACGTCTTCTCCAGCATTTGTTGGTCATCACCGTGAATCACAAGCGCCTCGGTCA
TGCCAGAGCACGCCATGTGAGTTTTTGCCTCGTCGTGGGAATGGGAATGCACAACTGAAT
ACTGTGTATGAAGACACGAACCATTCACCAAGCAGAAACACACAACAACAACCCCTCAAA
TATCTCCACGATCGCTACAGAGTTAGTCAACCAAGCATTACTATAACTCAATCCCAAAAC
ATTAACAATTCGATTGTATATTCCATAAACAAACCTCCTTTATCGAGTTTTGACAATAAT
TATAGAACAAATCACAACATCGAGCAACAAAATTCCTTTTTACCTGAAACCGACAAACCG
CCCAGTGGTGTTTTAGGTAAATTTGGAGATATCAGACGAAATAGAAAACCTGTTGTTCAA
ACTAAATTCTTTAGGATCACCCGACTTAATGCCAAAGCTGTATTCAAAAGGGAAGTCAAA
CTATCCGATAGTGATGGTTGCAAACCTTATATACAGTACCATGTTTTGGCACTTTAG
| SMART |
Cadherin (IPR002126) - T[88-164] 0.29 - T[190-275] 4.7E-19 - T[299-384] 6.4E-18 - T[414-507] 3.3E-18 - T[544-628] 1.1E-23 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[160-277] 8.71E-20 - T[265-392] 6.57E-25 - T[379-501] 7.0E-19 - T[497-635] 4.0E-22 - T[623-676] 6.28E-8 - T[704-760] 6.28E-8 |
| Pfam |
Cadherin (IPR002126) - T[174-267] 1.8E-10 - T[282-377] 6.5E-15 - T[398-500] 1.7E-13 - T[546-620] 2.1E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[265-275] . - T[374-384] . - T[618-628] . |
| PRINTS |
Cadherin (IPR002126) - T[326-345] 8.8E-28 - T[392-421] 8.8E-28 - T[474-486] 8.8E-28 - T[488-507] 8.8E-28 - T[507-520] 8.8E-28 - T[577-603] 8.8E-28 - T[612-629] 8.8E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 29.189 % | 300 | 1.29E-84 |
| PC11Y_HUMAN | 30.592 % | 277 | 2.18E-76 |
| PC11X_HUMAN | 30.719 % | 276 | 3.03E-76 |