- Transcript 'Moocci.CG.ELv1_2.S82...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S82356.g01110.01.t
Possible name(s)
LARP6; LARP7; SSB
Gene model
Location
S82356 [52,210 / 55,485]
Amino acid sequence
Length: 483
>Moocci.CG.ELv1_2.S82356.g01110.01.p
MNIITYSNNGQAHYVQTPYYISHGGNHPGYSKTTYYGPIQDRNNQQEFHNYGGIPTYVIV
PESMPYHHPNHPTMSCQPLDVKGNGYGNYSRKSSLSSQGYQTGSNYSNTSTRNNSRSESV
TSNEEKSKIHRCHSGDSGIASSTVFTSDDDTDNIKSIDYESLEENIWTVENDREYWILQN
RSPPSNFACANIVKQLEFYMCDEYLSKDKYLLRQIRCKKGGYVSIKLLASFKKLKKLATD
WESLRSAVTRKSTQLIVSEEGCRIRRIVPLSDELLKPRMLTSVLAIRLPQQYNSVDMVTS
LFRIFGEIGLVRLLRSGKPIPTDLRNYATQVPDIGTSLCAVVEFESSSAAMAAVRVIKAR
ERGTIEDEYATSENVANEENFEEYFEKIKNLPELEDTRLALLGPRVRRTLYRQDREKNKE
PNENSVLVPTEVKLRLSDAKSTLNTSPSKRCPNTPPNVIRMPNGPTHGHDVTKCWKRKLV
LTC
Nucleotide sequence
Length: 1,567
>Moocci.CG.ELv1_2.S82356.g01110.01.t
ATGAATATTATCACATATTCAAATAACGGACAGGCGCACTATGTGCAAACACCCTACTAC
ATTTCTCACGGGGGCAATCACCCAGGATACTCTAAAACAACATATTATGGACCGATCCAA
GACCGAAATAATCAACAAGAGTTTCATAACTATGGCGGAATACCGACTTACGTCATCGTC
CCAGAAAGCATGCCATACCACCACCCAAACCATCCCACTATGTCATGTCAACCGCTCGAT
GTTAAGGGCAACGGATATGGAAATTATAGCAGAAAAAGTAGTTTATCATCTCAAGGCTAC
CAGACTGGATCCAACTATTCAAACACTTCTACTCGAAACAACAGCAGGTCGGAATCCGTA
ACGTCAAATGAAGAAAAATCCAAGATTCACCGTTGCCATAGTGGTGACAGTGGGATTGCG
TCATCAACAGTTTTTACCAGTGATGACGACACTGACAATATTAAATCTATCGATTACGAG
TCGTTAGAGGAAAACATTTGGACAGTTGAAAATGACAGAGAATACTGGATTTTGCAAAAC
CGTTCTCCTCCAAGCAACTTTGCTTGCGCAAACATTGTCAAACAACTTGAGTTTTACATG
TGCGATGAATATTTGTCCAAAGACAAATACCTACTCCGTCAGATCAGATGTAAAAAGGGA
GGTTACGTCAGTATAAAACTCCTTGCATCGTTCAAAAAACTAAAGAAACTGGCTACAGAT
TGGGAATCTTTGAGATCAGCAGTGACTCGAAAATCCACACAACTTATTGTGAGCGAAGAA
GGATGCAGAATTAGAAGAATAGTACCACTGTCTGACGAACTCCTTAAACCTCGCATGCTG
ACTTCGGTGTTGGCTATTCGACTTCCACAACAGTACAACTCTGTTGATATGGTGACGTCA
TTGTTTCGTATATTTGGTGAAATTGGTTTAGTGCGATTGCTGAGATCTGGAAAACCTATT
CCGACAGATTTGCGAAATTATGCCACCCAAGTACCTGACATTGGAACTTCTTTGTGTGCT
GTTGTTGAATTTGAATCATCATCTGCAGCAATGGCTGCAGTCCGTGTGATTAAAGCTAGA
GAAAGAGGCACTATTGAAGATGAATATGCAACATCCGAAAATGTTGCAAATGAGGAAAAT
TTTGAAGAATATTTTGAAAAAATTAAAAATCTTCCCGAACTTGAAGATACCAGGCTGGCC
TTACTTGGACCTAGAGTGCGTAGAACTTTGTACAGACAAGACAGGGAAAAGAATAAAGAG
CCAAACGAAAACTCTGTTTTAGTTCCGACTGAAGTTAAACTACGCTTGAGCGACGCAAAG
TCAACCCTAAATACCTCTCCTTCCAAGCGGTGCCCAAATACGCCACCTAACGTTATCCGA
ATGCCGAACGGTCCAACACACGGTCATGACGTCACGAAATGTTGGAAGCGCAAACTTGTT
TTAACTTGTTAATTTTCCAAAACACTGTATATACTTGTTTTTGACTGTGTGTTATTTATA
TTTGAGATTTTTTTATTGATAATTTTATTTATTTTGTATATTATTTTGACCGTATATAAT
TAAATAA
| ProSiteProfiles |
La_HTH (IPR006630) - T[182-274] 19.69 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[185-271] 1.9E-17 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[186-274] 1.3E-21 |
| SMART |
La_HTH (IPR006630) - T[186-267] 3.4E-19 |
| Pfam |
La_HTH (IPR006630) - T[192-248] 6.4E-17 |
| PRINTS |
Lupus_La (IPR002344) - T[195-212] 3.9E-5 - T[221-236] 3.9E-5 - T[253-266] 3.9E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 35.714 % | 121 | 1.08E-29 |