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TRANSCRIPT CARD

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  1. Clone 'cien212915' > 
  2. EST 'AHC0AAA235YL22_RM1' > 
  3. Transcript 'Harore.CG.MTP2014.S2...' > 
  4. Transcript 'Harore.CG.MTP2014.S9...' > 
  5. Transcript 'Boleac.CG.SB_v3.S0.g...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S0.g00033.01.t

Possible name(s)

SORL1; TMPRSS6; VLDLR

Gene model

Boleac.CG.SB_v3.S0.g00033

Location

S0 [297,215 / 300,670]

Sequences

Amino acid sequence

Length: 723

>Boleac.CG.SB_v3.S0.g00033.01.p
MIRMVLQESQDDVIDCFNAKIGDYIRARKCDGRPECMNGEDECGIGCNSRXPRLMSGSGS
GDYEYMDDTNSTDAEFCKLLTNDYREFECLSWLDESGSRKSQLHKFPFSVVQISICDGEQ
DCPDGSDEMFCPNRIPCYTNTSEQNYDNPLQSFDETQRCDGHPHCRNGRDEDPAHCQTAT
HERLPCEDKSISRKPTSTFSPQNYLDGEKQCDTGADECPPFFSKITAVRDVIYSNDTKQP
QVGISSHDAAIGNTAVQVRASALVVSFALGLYDITIAWFRLCKSGTELTPRSFIIYIREV
VVYIGITVSKGFLCGFFAYIRIKRSEESNYGMIDMKWRSSLTCNIAGTIALIGCQIPVST
LAVFVIAYLIFNSVSNKRKRRKPMMTNGDGCLEDGFHANRENTMKNGRRNHIAMIFACFI
LVIIIWLPVITLVILLQTPSDIRFQTESYGWVISRGTPQIFHANLISQDNAMDFVSKLMA
LSHNTTEKLLETESIFSFSNFPNIVNSVFPRLRLERLGTFGYFSQSGTCLPAYLVHVTGG
EAPFDIAVSNLGSISLSILIIAVNFALMFCTGVLNTRYGAGISKLCPTGSACHERHYILS
RTFSRLIAIETITWTVITLSYLLKSIDPDIATDKTYTTICIVAIGANCGIITPFVLLMRK
FPAGDLSERKQTRRSRQRSSEEQRVIEVEKSNEKQHLTDQVDQSRENAVRSPETCGLMEN
IHD

Nucleotide sequence

Length: 2,172

>Boleac.CG.SB_v3.S0.g00033.01.t
ATGATTCGCATGGTTTTACAGGAGTCACAAGATGACGTCATCGACTGCTTCAACGCGAAA
ATCGGCGACTATATTCGTGCTCGGAAATGCGATGGACGACCGGAATGCATGAACGGGGAA
GATGAATGCGGAATTGGATGCAACAGTCGAGANCCACGTTTGATGAGCGGATCTGGATCG
GGTGATTACGAGTATATGGATGATACCAACTCCACAGACGCGGAATTTTGCAAATTACTT
ACCAATGATTATCGCGAGTTCGAGTGTTTGTCATGGCTGGATGAGAGCGGTTCAAGAAAG
TCACAATTACACAAATTTCCCTTTTCAGTTGTCCAAATCTCTATTTGCGATGGTGAGCAA
GATTGTCCTGATGGGTCCGATGAAATGTTTTGTCCCAACAGGATCCCATGCTATACAAAC
ACCTCAGAACAAAACTACGATAACCCTCTGCAAAGCTTCGATGAAACGCAACGTTGCGAT
GGACATCCGCATTGCCGGAATGGAAGAGATGAAGATCCTGCTCATTGCCAAACTGCGACG
CATGAAAGACTACCTTGTGAAGACAAATCTATTTCAAGAAAACCTACCTCTACTTTCTCA
CCGCAAAACTATCTTGATGGGGAAAAACAGTGCGACACCGGCGCAGATGAATGCCCGCCA
TTTTTCAGTAAAATCACAGCGGTCAGGGACGTCATTTACAGCAATGACACAAAGCAACCT
CAAGTTGGCATTTCGAGCCATGATGCAGCTATCGGAAACACGGCGGTACAGGTACGAGCA
AGTGCGTTGGTGGTATCCTTCGCACTTGGGTTGTACGACATCACAATCGCTTGGTTTCGT
CTATGCAAATCGGGAACTGAATTAACTCCTCGGAGTTTCATAATCTACATCAGAGAGGTT
GTAGTTTACATTGGAATTACAGTATCAAAAGGATTCCTCTGTGGATTCTTTGCTTATATC
AGAATCAAACGATCAGAAGAGTCAAACTATGGTATGATTGATATGAAATGGCGTTCAAGC
CTGACATGCAACATCGCAGGAACAATCGCATTGATTGGTTGTCAAATCCCTGTTTCAACA
CTGGCCGTTTTCGTGATAGCCTATTTAATATTTAATTCCGTAAGCAACAAGAGGAAAAGA
AGAAAGCCTATGATGACAAATGGAGATGGGTGTTTGGAAGATGGCTTCCATGCGAACAGA
GAAAATACAATGAAAAATGGACGTCGCAACCATATCGCTATGATATTCGCCTGCTTCATT
TTAGTTATCATCATTTGGTTGCCTGTGATTACGCTGGTAATACTCCTGCAGACGCCGTCT
GATATACGTTTTCAAACCGAATCATATGGGTGGGTGATATCAAGAGGCACTCCACAGATT
TTTCACGCGAATCTCATTAGTCAAGATAATGCCATGGACTTCGTTAGCAAACTGATGGCG
TTGTCTCACAATACAACAGAAAAGCTTTTGGAAACGGAATCGATATTTTCTTTCTCTAAT
TTTCCTAATATCGTCAACAGCGTTTTCCCAAGATTGCGTCTGGAAAGGTTGGGAACATTT
GGGTATTTCTCTCAAAGCGGAACATGTCTTCCCGCGTATTTGGTGCACGTCACCGGAGGC
GAAGCTCCATTCGACATTGCTGTGTCGAATCTCGGCTCAATAAGTTTATCAATTCTGATA
ATAGCGGTTAATTTTGCGTTGATGTTTTGCACGGGAGTCCTTAATACACGATATGGCGCT
GGAATATCAAAGTTATGCCCGACGGGATCGGCTTGCCATGAAAGACATTACATTTTAAGT
CGAACATTTTCAAGGTTGATCGCTATAGAAACTATCACTTGGACTGTTATTACGTTATCA
TACTTGTTGAAGTCCATCGATCCGGATATCGCGACGGACAAAACTTATACGACAATATGC
ATTGTGGCAATCGGAGCTAATTGTGGCATAATTACACCGTTTGTTCTATTGATGAGAAAA
TTCCCAGCGGGAGATTTGTCCGAACGCAAGCAAACACGACGATCCAGGCAACGATCCAGT
GAGGAGCAAAGAGTAATCGAGGTAGAGAAGTCGAACGAAAAGCAGCATCTAACGGATCAA
GTCGACCAGTCGCGCGAAAATGCCGTGCGAAGTCCTGAGACGTGCGGCTTGATGGAAAAC
ATCCACGATTAG

InterProScan

PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[21-42] 1.9E-8 - T[107-128] 1.9E-8 - T[150-171] 1.9E-8 - T[196-217] 1.9E-8
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[76-132] 8.863
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[115-131] 1.12494E-4

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value