- Transcript 'KH2012:KH.C1.264.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C1.264.v3....' >
- Transcript 'KH2012:KH.C3.551.v1....' >
- Transcript 'Boleac.CG.SB_v3.S0.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S0.g00059.01.t
Possible name(s)
COL7A1; FN1; TNN
Gene model
Location
S0 [555,182 / 562,993]
Amino acid sequence
Length: 1,127
>Boleac.CG.SB_v3.S0.g00059.01.p
IPAPKNVKVVADSVTDTEFWVTWELVSKADSYKVILSPPEIGASGIGNGITDKFTAIGGL
APDTEYKVTIIPVKGNDQGTPAVVVQRTALPAPSSLFVVSDTVSATQFVVGWAKVDGAQS
YTLEVNPSTGVSGAGRGLYKTNANLLGLTPNTLYSITVRAINWVGLGAATTIRQLTKLPP
PSNVRVVTATISHNTMSVHWDPVVGADTYEVAVSPEDGVRGGGQGITETYVILRNLQADT
QYRVQVASTNGAGLSDYKQAIAKTLSVCYAKGMDFTKDVFTVRCPSRCARNQEHVYGTRE
YTADSYICAAAVHDGRIDDNIGGEVVVKKRPGLPHYVGTTKHGVVSQDYGSWHQSFVFGL
QIPQNFRVQPGSVRHNSFTVLWDGVNGADAYRIAVQPGFGVVGARPGIEDTKATLSNMRS
NIQYTVYLTATNTLETSEASILKQFTALAGPPRVEVIPESVTHDRMNISWFPVIGATHYV
LEVSAGTTSFKHESKRSWTTIDGLMSGTKYRIAVRAANSVGPGGATIVSQYTKLSTPMNV
DAESVNWQRMHIQWDAVPGASHYVITTVPTNPRNTSLTTTNPWIWIENLISDTMYEVWIQ
AVNEHEKSKSVSIKQMTALGQPRDLQVTSKTHSSISLMWKRVKNADSYFITIASIDGRQT
ANDEIKANQVTLTDLDGRTEYKVKVVARNKIGDGQPSTIGVTTLIPPPKNLIVRGSTSDP
TQIEVTWSQMPESTGYYITVFPQGDVSGTGIVTENRGVVGGLRSGISYTLNVMAVIGAER
GMNATATFATGLPSPSNVRVQREYIKTNSLFVVWNPVSLAQYYNVTYQNMRTREIKTIRS
ITNTSSYLQDLDPGTSYLITVYAMGISRYGGRTIQRGSVGATTVGTTMLESPSDLQISQR
ADSSVTIGWTPVAFASYYIVYISPVDGVNGTGQHQSTEVTLSGLTPGQDYIAWVRAVNEE
NNATSLGQEIVINTEGNPPEIFYEDDDPALGDNMSDIIPSDTGGDSDSGTSEYDPNLKQP
VEEEESSWIVIVIIVIVIGLLILLGLLPCCCDCLTKKPMLKCSGFCGCCAPCSDAGCCGC
VGCCNASRRGTKFTDEDIGGYPMTTYTPRASRRGSRTYSKQPYSVHH
Nucleotide sequence
Length: 3,508
>Boleac.CG.SB_v3.S0.g00059.01.t
ATTCCAGCACCGAAAAACGTGAAAGTCGTTGCCGATTCGGTAACCGACACGGAATTTTGG
GTGACGTGGGAATTGGTATCTAAAGCGGATTCCTATAAGGTTATCCTATCACCCCCTGAA
ATTGGAGCGTCGGGAATTGGCAACGGGATTACAGATAAATTTACCGCTATTGGAGGCTTG
GCTCCTGACACAGAATACAAAGTGACTATAATCCCCGTGAAAGGTAACGATCAAGGTACA
CCGGCGGTTGTGGTGCAACGAACAGCACTTCCTGCCCCATCGAGCTTATTTGTTGTGTCA
GACACCGTCAGTGCTACTCAATTCGTTGTTGGATGGGCCAAAGTTGATGGAGCACAATCG
TATACGTTAGAAGTCAACCCTTCTACAGGTGTCAGTGGAGCTGGTCGAGGATTGTATAAA
ACCAATGCCAACCTTCTTGGTCTTACCCCAAACACTCTCTACTCGATTACCGTTCGTGCG
ATCAATTGGGTGGGTTTGGGTGCGGCAACGACAATACGACAACTAACAAAGCTACCACCA
CCGTCTAACGTGCGAGTAGTGACTGCGACTATATCGCACAATACAATGAGTGTTCATTGG
GATCCAGTGGTAGGAGCTGACACGTATGAAGTTGCTGTGTCTCCTGAGGATGGAGTAAGA
GGGGGCGGGCAAGGAATTACAGAAACATATGTCATTTTGAGAAATTTACAAGCTGACACG
CAGTACCGAGTTCAGGTCGCTTCTACCAACGGTGCCGGATTGAGTGATTATAAACAGGCA
ATTGCCAAAACACTGTCTGTTTGTTACGCGAAAGGGATGGATTTCACTAAGGACGTCTTC
ACAGTGAGATGTCCTTCCCGATGTGCACGGAATCAAGAGCATGTTTATGGCACAAGAGAA
TACACAGCCGATTCATATATATGTGCCGCAGCCGTTCATGACGGTCGCATTGATGACAAT
ATTGGTGGTGAGGTCGTCGTCAAAAAACGTCCAGGGTTACCTCATTATGTAGGGACTACG
AAGCATGGTGTTGTATCTCAAGATTACGGCAGTTGGCATCAATCATTTGTGTTCGGCCTG
CAAATACCACAAAACTTTCGCGTACAGCCGGGATCCGTCAGACACAATTCGTTTACAGTA
CTATGGGATGGAGTTAACGGTGCAGACGCCTACAGAATAGCCGTACAGCCAGGTTTCGGT
GTCGTTGGTGCCAGACCAGGTATTGAAGATACAAAAGCCACTTTGTCAAATATGAGATCT
AATATTCAATACACTGTGTATCTAACTGCAACTAACACATTGGAAACGAGCGAAGCATCC
ATTTTGAAGCAGTTCACTGCNCTTGCTGGACCGCCACGAGTGGAGGTGATTCCTGAATCA
GTCACTCATGACCGAATGAATATCTCATGGTTTCCGGTGATAGGAGCAACCCATTACGTA
TTGGAGGTATCAGCAGGAACGACATCGTTCAAGCATGAGTCGAAAAGATCTTGGACTACG
ATCGACGGACTGATGAGTGGGACGAAATACAGAATTGCTGTGAGAGCTGCGAACAGTGTG
GGTCCTGGTGGAGCGACGATTGTGTCGCAATATACGAAACTTTCCACGCCTATGAATGTG
GACGCAGAATCAGTGAACTGGCAACGCATGCATATTCAATGGGATGCCGTTCCAGGAGCC
TCTCATTACGTCATCACCACTGTTCCTACTAATCCAAGGAATACTTCTCTGACAACTACA
AACCCATGGATATGGATTGAAAACCTTATTTCTGACACCATGTATGAAGTTTGGATTCAA
GCTGTAAATGAACATGAGAAAAGCAAATCAGTCTCCATAAAGCAAATGACTGCTTTGGGT
CAGCCTCGTGATTTACAAGTTACGAGTAAAACTCACAGCAGCATATCGTTGATGTGGAAG
AGAGTGAAGAATGCTGATTCTTACTTCATCACGATCGCATCTATCGACGGCAGGCAAACA
GCCAATGATGAGATTAAAGCAAACCAAGTCACACTAACAGATTTGGATGGAAGGACAGAA
TACAAAGTCAAAGTCGTCGCGAGGAATAAAATTGGAGATGGACAACCGTCAACTATTGGA
GTTACAACGCTTATACCACCTCCGAAAAACCTGATTGTTCGTGGAAGCACGTCTGACCCG
ACGCAAATTGAGGTTACATGGTCACAGATGCCCGAGTCAACAGGATATTACATCACGGTT
TTTCCGCAAGGAGATGTTAGCGGAACAGGTATCGTAACTGAAAATAGAGGAGTTGTTGGA
GGTCTCAGATCAGGCATCTCGTATACGTTGAACGTGATGGCTGTCATCGGGGCCGAGCGA
GGAATGAACGCAACGGCAACATTTGCGACTGGATTGCCATCACCATCAAATGTGCGAGTT
CAACGGGAATACATCAAAACAAACAGTTTGTTCGTCGTTTGGAATCCTGTCAGCTTGGCG
CAGTATTACAATGTCACCTATCAGAATATGAGAACGAGAGAAATCAAGACCATCCGTTCC
ATCACAAACACATCCTCGTACCTTCAAGATCTAGATCCAGGCACTTCATATCTCATAACC
GTGTACGCTATGGGAATATCACGCTATGGAGGTCGCACAATACAACGTGGTTCAGTTGGA
GCCACAACAGTCGGAACGACAATGTTGGAATCGCCATCAGATTTGCAAATTTCGCAAAGA
GCCGATTCCTCGGTGACAATAGGATGGACTCCGGTTGCTTTTGCCTCGTATTATATTGTC
TACATCAGCCCCGTTGACGGTGTTAACGGCACGGGGCAACACCAATCAACAGAAGTAACA
CTGTCCGGTTTAACGCCTGGTCAAGATTATATTGCATGGGTCCGTGCGGTGAACGAAGAA
AACAATGCTACTAGCCTTGGCCAAGAAATTGTTATCAATACCGAAGGCAACCCGCCTGAG
ATATTTTATGAAGATGACGATCCAGCTCTCGGCGATAATATGTCGGACATCATACCTTCC
GATACAGGCGGTGATTCAGATTCCGGTACAAGCGAATACGATCCAAATCTGAAACAACCC
GTGGAAGAAGAAGAAAGTAGCTGGATTGTGATTGTGATCATCGTCATTGTAATAGGTCTA
CTCATTCTGCTAGGGCTGCTGCCTTGCTGCTGTGACTGTCTGACTAAGAAACCAATGCTC
AAATGCAGCGGATTTTGTGGTTGCTGTGCTCCATGTAGTGACGCGGGATGTTGTGGATGT
GTCGGATGTTGCAATGCATCTCGCAGAGGAACAAAATTTACCGATGAAGACATTGGTGGC
TATCCAATGACTACTTACACACCGAGAGCATCCCGGCGAGGCTCGAGAACGTATTCAAAA
CAGCCATACTCGGTCCATCACTGAACCGATCTTGTATGTTAATGTGCAATAAACTCCACA
ACCGATTTCTCGCTCTTCTGGATGATGAGAAACTAACTTCCCATCACGAATACCCCACAG
CTTACATTCAGTCGAAATCAAACATGCC
| SMART |
FN3_dom (IPR003961) - T[1-81] 0.0015 - T[91-167] 3.4E-5 - T[178-255] 1.7E-9 - T[360-437] 2.8 - T[449-523] 1.2E-8 - T[534-608] 2.1E-5 - T[619-694] 2.6E-9 - T[705-781] 4.7E-4 - T[792-870] 0.025 - T[889-964] 4.6E-9 |
| Gene3D |
Ig-like_fold (IPR013783) - T[1-92] 7.2E-9 - T[93-175] 2.1E-8 - T[176-264] 5.8E-12 - T[361-449] 3.8E-6 - T[450-533] 3.3E-10 - T[534-616] 7.6E-11 - T[617-703] 1.0E-16 - T[704-791] 3.0E-8 - T[792-884] 7.6E-8 - T[888-977] 5.5E-13 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[2-88] 3.15E-8 - T[100-261] 7.84E-18 - T[363-529] 8.11E-15 - T[535-704] 4.01E-22 - T[703-790] 1.59E-8 - T[799-961] 1.41E-17 |
| CDD |
FN3_dom (IPR003961) - T[2-86] 7.79644E-4 - T[91-176] 4.05331E-4 - T[179-257] 4.95517E-8 - T[450-523] 5.42437E-5 - T[535-617] 3.26491E-5 - T[620-703] 8.99199E-10 - T[706-781] 4.55713E-4 - T[795-863] 8.17392E-5 - T[892-960] 4.1978E-8 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[3-92] 11.18 - T[93-179] 8.3 - T[180-270] 13.744 - T[362-450] 10.217 - T[451-539] 12.332 - T[621-708] 16.466 - T[794-890] 12.363 - T[891-977] 13.626 |
| Pfam |
FN3_dom (IPR003961) - T[179-255] 1.7E-7 - T[621-697] 6.3E-11 - T[793-864] 2.2E-6 - T[891-960] 2.2E-8 |
| ProSiteProfiles |
LCCL (IPR004043) - T[262-356] 23.386 |
| Gene3D |
LCCL_sf (IPR036609) - T[265-360] 8.2E-30 |
| SUPERFAMILY |
LCCL_sf (IPR036609) - T[268-358] 1.83E-26 |
| SMART |
LCCL (IPR004043) - T[268-347] 1.7E-12 |
| Pfam |
LCCL (IPR004043) - T[273-356] 3.3E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 26.775 % | 109 | 7.42E-24 |
| FINC_HUMAN | 24.108 % | 124 | 1.42E-28 |
| CO7A1_HUMAN | 26.117 % | 124 | 1.87E-28 |