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TRANSCRIPT CARD

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  1. Clone 'cinc029f15' > 
  2. Transcript 'Boschl.CG.Botznik201...' > 
  3. Region 'REG00000379' > 
  4. Clone 'AHC0AAA54YF11' > 
  5. Transcript 'Boleac.CG.SB_v3.S0.g...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S0.g00078.01.t

Possible name(s)

COL12A1; COL6A5; COL6A6

Gene model

Boleac.CG.SB_v3.S0.g00078

Location

S0 [740,033 / 744,324]

Sequences

Amino acid sequence

Length: 511

>Boleac.CG.SB_v3.S0.g00078.01.p
MLALRLLVTIVVLIAPSSALKCWRCENARSAGQCIEFGRPQLCKKSETVCQTELRFSSGW
GEAPTIRSGCKEDHACDNNHIQNPRSAWRPSQCNSGKANSVCRCCCNTNLCNQNELLCET
ALCSGIAAAPRNGKAKCQRSRYAGSRCTYSCNAGYYMAGNNKGSICKIFGDTARWTGSLP
VCRKQPFCNPITAPEGGTARCFGGRNVGSYCVFTCDKRREMEGSSAISCIQTGDGPQWTD
LPPTCAVATCDDLGEITHGNIRCSNKSNVLGTTCSFDCGESELFLTPSDSNSSRCVWRED
KAQWNRPKPCCSGIVCPPTVKKDIVIAIDSSGSISSDEWVRMKDFVVHVLEKFPISRDNV
QIAMFRFNREIDTESQINFGDHNTLDGLKKAIDDMPKNGGGTFIGQALRHVRDNILRHPN
NRRNVGDMLWVLTDGRSNDLFKETAEELRGNGVEIIALGITRKNRLEFLQDLVDLTGDRN
LIMEVSDVINSFEDDLVHLATKKICEIHCLS

Nucleotide sequence

Length: 1,536

>Boleac.CG.SB_v3.S0.g00078.01.t
ATGCTTGCACTACGATTACTTGTGACCATTGTAGTATTGATTGCTCCATCATCAGCTCTA
AAATGCTGGAGATGTGAAAATGCCAGATCCGCCGGCCAATGCATAGAGTTCGGCAGACCA
CAACTTTGCAAGAAGTCAGAAACTGTGTGTCAAACGGAGCTACGTTTCTCATCAGGATGG
GGTGAAGCTCCCACAATTCGAAGTGGTTGTAAAGAAGACCATGCATGCGATAACAATCAC
ATTCAGAATCCAAGAAGTGCGTGGAGGCCGTCTCAGTGTAATAGTGGAAAAGCGAATTCT
GTGTGTCGCTGTTGCTGCAACACCAACTTATGTAATCAGAACGAACTTCTATGTGAAACA
GCGCTGTGCTCTGGCATTGCCGCTGCCCCACGTAATGGAAAAGCGAAATGCCAACGAAGT
CGATATGCTGGAAGCCGTTGCACGTATTCGTGCAATGCAGGATATTATATGGCAGGAAAC
AACAAAGGGTCGATATGCAAAATATTCGGGGATACGGCAAGATGGACTGGCTCATTACCA
GTTTGTCGGAAACAGCCATTTTGCAATCCAATAACCGCACCGGAAGGTGGTACAGCTAGA
TGCTTTGGAGGCCGAAATGTTGGATCGTATTGTGTTTTCACATGCGACAAGAGACGTGAG
ATGGAGGGGTCGTCAGCGATTTCATGCATACAAACTGGGGATGGCCCGCAATGGACAGAT
TTACCACCAACTTGCGCAGTGGCTACGTGCGACGATCTCGGTGAAATTACCCACGGAAAC
ATAAGGTGTTCAAACAAAAGCAACGTACTGGGGACGACTTGTTCTTTTGATTGTGGTGAA
AGCGAACTATTTCTCACCCCTTCCGATTCGAACAGCTCTCGTTGTGTTTGGAGGGAAGAC
AAAGCTCAATGGAATCGGCCGAAACCTTGCTGCAGTGGCATTGTGTGTCCTCCAACTGTG
AAGAAAGACATCGTGATCGCTATCGATTCATCCGGATCTATAAGTAGTGATGAATGGGTC
AGAATGAAGGATTTCGTCGTCCACGTCTTAGAGAAGTTCCCTATTTCCCGCGACAATGTA
CAAATAGCTATGTTCCGGTTCAATAGAGAAATTGATACAGAGTCTCAAATAAATTTCGGT
GACCACAACACCTTGGATGGCCTAAAGAAAGCGATTGACGATATGCCGAAAAACGGTGGA
GGCACGTTTATTGGACAAGCACTACGTCATGTTCGTGACAACATACTCAGACACCCTAAC
AACCGTCGTAATGTGGGAGATATGTTGTGGGTATTGACCGATGGAAGATCAAATGATTTG
TTCAAAGAGACGGCTGAGGAACTGCGAGGAAACGGAGTTGAGATAATTGCGCTCGGCATT
ACAAGAAAAAACAGACTGGAATTCCTGCAAGATTTGGTGGATCTGACAGGAGACAGGAAT
CTCATTATGGAAGTCAGTGACGTCATCAACAGTTTCGAAGACGACTTGGTTCATTTGGCT
ACAAAGAAGATTTGCGAGATTCACTGCTTATCGTAA

InterProScan

SUPERFAMILY
Sushi/SCR/CCP_sf (IPR035976) - T[118-184] 2.92E-10 - T[187-259] 1.81E-11 - T[244-312] 1.17E-7
ProSiteProfiles
Sushi_SCR_CCP_dom (IPR000436) - T[121-184] 8.665 - T[186-247] 7.35 - T[248-313] 7.236
SMART
Sushi_SCR_CCP_dom (IPR000436) - T[123-182] 7.9E-6 - T[188-245] 4.7E-6 - T[250-311] 0.015
CDD
Sushi_SCR_CCP_dom (IPR000436) - T[130-183] 1.12274E-6 - T[188-245] 1.66288E-6 - T[250-311] 0.00294975
Pfam
Sushi_SCR_CCP_dom (IPR000436) - T[131-182] 1.2E-4 - T[188-245] 0.0015
SUPERFAMILY
vWFA_dom_sf (IPR036465) - T[307-487] 4.9E-40
Gene3D
vWFA_dom_sf (IPR036465) - T[320-509] 2.5E-39
SMART
VWF_A (IPR002035) - T[321-490] 1.4E-29
ProSiteProfiles
VWF_A (IPR002035) - T[323-504] 24.641
Pfam
VWF_A (IPR002035) - T[323-481] 2.1E-31

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CO6A5_HUMAN 29.843 % 82.4 2.61E-16
COCA1_HUMAN 31.25 % 87.4 7.06E-18
CO6A6_HUMAN 32.222 % 84.3 5.93E-17