- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C1.12.v2.A...' >
- Clone 'AHC0AAA54YF11' >
- Transcript 'Mooccu.CG.ELv1_2.S42...' >
- Transcript 'Boleac.CG.SB_v3.S0.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S0.g00078.01.t
Possible name(s)
COL12A1; COL6A5; COL6A6
Gene model
Location
S0 [740,033 / 744,324]
Amino acid sequence
Length: 511
>Boleac.CG.SB_v3.S0.g00078.01.p
MLALRLLVTIVVLIAPSSALKCWRCENARSAGQCIEFGRPQLCKKSETVCQTELRFSSGW
GEAPTIRSGCKEDHACDNNHIQNPRSAWRPSQCNSGKANSVCRCCCNTNLCNQNELLCET
ALCSGIAAAPRNGKAKCQRSRYAGSRCTYSCNAGYYMAGNNKGSICKIFGDTARWTGSLP
VCRKQPFCNPITAPEGGTARCFGGRNVGSYCVFTCDKRREMEGSSAISCIQTGDGPQWTD
LPPTCAVATCDDLGEITHGNIRCSNKSNVLGTTCSFDCGESELFLTPSDSNSSRCVWRED
KAQWNRPKPCCSGIVCPPTVKKDIVIAIDSSGSISSDEWVRMKDFVVHVLEKFPISRDNV
QIAMFRFNREIDTESQINFGDHNTLDGLKKAIDDMPKNGGGTFIGQALRHVRDNILRHPN
NRRNVGDMLWVLTDGRSNDLFKETAEELRGNGVEIIALGITRKNRLEFLQDLVDLTGDRN
LIMEVSDVINSFEDDLVHLATKKICEIHCLS
Nucleotide sequence
Length: 1,536
>Boleac.CG.SB_v3.S0.g00078.01.t
ATGCTTGCACTACGATTACTTGTGACCATTGTAGTATTGATTGCTCCATCATCAGCTCTA
AAATGCTGGAGATGTGAAAATGCCAGATCCGCCGGCCAATGCATAGAGTTCGGCAGACCA
CAACTTTGCAAGAAGTCAGAAACTGTGTGTCAAACGGAGCTACGTTTCTCATCAGGATGG
GGTGAAGCTCCCACAATTCGAAGTGGTTGTAAAGAAGACCATGCATGCGATAACAATCAC
ATTCAGAATCCAAGAAGTGCGTGGAGGCCGTCTCAGTGTAATAGTGGAAAAGCGAATTCT
GTGTGTCGCTGTTGCTGCAACACCAACTTATGTAATCAGAACGAACTTCTATGTGAAACA
GCGCTGTGCTCTGGCATTGCCGCTGCCCCACGTAATGGAAAAGCGAAATGCCAACGAAGT
CGATATGCTGGAAGCCGTTGCACGTATTCGTGCAATGCAGGATATTATATGGCAGGAAAC
AACAAAGGGTCGATATGCAAAATATTCGGGGATACGGCAAGATGGACTGGCTCATTACCA
GTTTGTCGGAAACAGCCATTTTGCAATCCAATAACCGCACCGGAAGGTGGTACAGCTAGA
TGCTTTGGAGGCCGAAATGTTGGATCGTATTGTGTTTTCACATGCGACAAGAGACGTGAG
ATGGAGGGGTCGTCAGCGATTTCATGCATACAAACTGGGGATGGCCCGCAATGGACAGAT
TTACCACCAACTTGCGCAGTGGCTACGTGCGACGATCTCGGTGAAATTACCCACGGAAAC
ATAAGGTGTTCAAACAAAAGCAACGTACTGGGGACGACTTGTTCTTTTGATTGTGGTGAA
AGCGAACTATTTCTCACCCCTTCCGATTCGAACAGCTCTCGTTGTGTTTGGAGGGAAGAC
AAAGCTCAATGGAATCGGCCGAAACCTTGCTGCAGTGGCATTGTGTGTCCTCCAACTGTG
AAGAAAGACATCGTGATCGCTATCGATTCATCCGGATCTATAAGTAGTGATGAATGGGTC
AGAATGAAGGATTTCGTCGTCCACGTCTTAGAGAAGTTCCCTATTTCCCGCGACAATGTA
CAAATAGCTATGTTCCGGTTCAATAGAGAAATTGATACAGAGTCTCAAATAAATTTCGGT
GACCACAACACCTTGGATGGCCTAAAGAAAGCGATTGACGATATGCCGAAAAACGGTGGA
GGCACGTTTATTGGACAAGCACTACGTCATGTTCGTGACAACATACTCAGACACCCTAAC
AACCGTCGTAATGTGGGAGATATGTTGTGGGTATTGACCGATGGAAGATCAAATGATTTG
TTCAAAGAGACGGCTGAGGAACTGCGAGGAAACGGAGTTGAGATAATTGCGCTCGGCATT
ACAAGAAAAAACAGACTGGAATTCCTGCAAGATTTGGTGGATCTGACAGGAGACAGGAAT
CTCATTATGGAAGTCAGTGACGTCATCAACAGTTTCGAAGACGACTTGGTTCATTTGGCT
ACAAAGAAGATTTGCGAGATTCACTGCTTATCGTAA
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[118-184] 2.92E-10 - T[187-259] 1.81E-11 - T[244-312] 1.17E-7 |
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[121-184] 8.665 - T[186-247] 7.35 - T[248-313] 7.236 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[123-182] 7.9E-6 - T[188-245] 4.7E-6 - T[250-311] 0.015 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[130-183] 1.12274E-6 - T[188-245] 1.66288E-6 - T[250-311] 0.00294975 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[131-182] 1.2E-4 - T[188-245] 0.0015 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[307-487] 4.9E-40 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[320-509] 2.5E-39 |
| SMART |
VWF_A (IPR002035) - T[321-490] 1.4E-29 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[323-504] 24.641 |
| Pfam |
VWF_A (IPR002035) - T[323-481] 2.1E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6A5_HUMAN | 29.843 % | 82.4 | 2.61E-16 |
| COCA1_HUMAN | 31.25 % | 87.4 | 7.06E-18 |
| CO6A6_HUMAN | 32.222 % | 84.3 | 5.93E-17 |