Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Cisavi.CG.ENS81.R70....' > 
  2. Clone 'cicl001a07' > 
  3. EST 'AHC0AAA222YI17_RM1' > 
  4. Transcript 'Boleac.CG.SB_v3.S0.g...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S0.g00148.01.t

Possible name(s)

MSI1; RBM24; RBM38

Gene model

Boleac.CG.SB_v3.S0.g00148

Location

S0 [1,348,314 / 1,357,054]

Sequences

Amino acid sequence

Length: 285

>Boleac.CG.SB_v3.S0.g00148.01.p
MTSAATTNFFNAPGHQAINSAGKPVNMMHHAQKDTTFTKIFVGGLPYHTTDASLRKYFEQ
FGEIEEAVVITDRLSSCSKGYGFVTMVDKLAAERACKDPNPVIDGRKANVNLAYIGAKPR
VTPAATALAVRQSPYAFVHQPLAATQTPYGVSALIPACNNPAAYVTPSGMLVSAPGFTQQ
VPMIDYGQGSYASHFAAANPSPFAQDVAASVAAAQYQAAAVPQIAAFPGYTHTVQATHVP
GTTAFQAHQGYAAVQPQSLTATTNPAYAQLTATIQAGERLGLANQ

Nucleotide sequence

Length: 2,142

>Boleac.CG.SB_v3.S0.g00148.01.t
TTTTTTACCAGGCGGGCCATGATTGTACCTGATGCATGTTGAGATAACCTTTCGATAATA
CGTTGTTACCGCGCTCAATAGGACACATATGGTTGCCGTTCTGTTGGATTGCTCTCTCAT
TTCATCGTAATTACTTCCCGACCAAAGTTTCCTGTTAATACGACCTCATCAAGCCACACT
TATAGCGGACTCGTCTATTCAAGGAAACTTTCCATACGGTCGTCTCTTCAAAGAGCAAGA
TTACCGCCCGAATAGTTCATTCAACTTCCACTGCCTTCCAGCAGCACGCAGCATCTGGGT
TGATATCTCAGCAACAGACTCAAGTCGTGAAAGATAGCAACGCGAGCACTGCCGGACAAG
AACTTTTGATCCCTTCGCAGCAACCAAGTTACAGACCTATAGAAGGAACTGGTTCGGAAG
GGATAACTTTGGAAGGCAGTGGGTTACATCAGCCATCGCAACAAGTTGCTGTACCTCTTC
ACGCGATCACTGTGGATAGTTTAAGTCGGAAACGCAGGGCTAGCCCTTCACTAGTACAGT
TTGAAGCTAACGGTGTAACAATAACGTCNTCAAGCTCAGTGACATCCTTCGACAGTACGG
AAGAGGAAAACGCTAAGAAAGCACGTGTGTTGGGTGAAGTACAAAGCATAACAGGAGCCG
TGAATCACGTACCTTCCGTCGCCCACAGATCTTTGGAAACAACAGGTTTAGGCTTGCATA
GCCAATCAAGGGGTATTATAGTGATTCCAGGAGCGCATCAGCAACAAGCGTTACCATCGG
CATTGCGCCATCATCAGATCGTACTTGGTGCTAACGCTGGTTTACACACTGCGAACGGAA
TTATACCTGGTACTCAGAGCCTAACTCCATTGCAAGCTACCCAATCGACACCTGTTCTTC
AGTTGCAAGCGAATCAGCAACCAGCTGTCATATCATTATCTAGTCAAGCCCCGAGTCAAG
TGGCAGCAGTAACCATGACAAGTGCAGCTACTACCAACTTTTTTAACGCTCCCGGACACC
AAGCCATTAACAGTGCCGGGAAGCCTGTTAACATGATGCATCATGCGCAGAAAGACACTA
CGTTTACGAAAATTTTTGTTGGTGGACTTCCCTACCACACGACGGACGCTTCGCTGCGGA
AATATTTCGAACAATTCGGTGAAATCGAGGAAGCTGTGGTTATCACGGATAGGCTTTCTT
CNTGTTCCAAGGGATATGGATTCGTTACCATGGTTGACAAACTGGCGGCAGAGCGTGCGT
GTAAAGATCCAAATCCAGTCATAGACGGAAGAAAGGCTAATGTCAACCTTGCGTACATCG
GTGCGAAGCCCAGAGTAACTCCAGCGGCTACAGCTCTGGCCGTTCGTCAATCACCCTATG
CATTTGTTCATCAACCATTAGCCGCAACGCAGACTCCATATGGAGTATCGGCACTGATTC
CGGCGTGTAATAATCCTGCCGCCTATGTGACCCCCTCTGGCATGTTAGTCTCGGCACCAG
GGTTCACGCAGCAAGTGCCGATGATCGATTACGGACAGGGTTCGTATGCTTCACATTTTG
CCGCAGCAAATCCATCACCGTTCGCGCAAGACGTTGCCGCCTCTGTTGCTGCAGCACAAT
ATCAAGCTGCTGCGGTGCCTCAGATAGCGGCTTTTCCTGGGTACACGCACACTGTTCAAG
CAACTCATGTTCCTGGTACTACTGCGTTCCAAGCTCATCAAGGGTATGCGGCCGTACAAC
CGCAATCTCTAACTGCGACTACGAACCCAGCGTATGCTCAACTTACCGCGACTATCCAAG
CTGGAGAGAGACTCGGGCTAGCGAATCAATAAGTTGTTTATGTCTAATAAGCAAACTAGC
AACGGGTGAACTGATGCGAGAATTCGCTTTACAAATAGCTTTCAGAAGAAGCCAAGCCAT
AGCATTTACAATTCAGAATGGAACTGGTCGAACAAAGCACGTACTTGCTTGAAACGGGAC
AAATCTTGCTATTTATACTTATACATTTTTCTGTTGTACTTCTTTACTATTTGAGTTGTA
TCAGACTGGCGATCACGAGGACGATGTATCTGTCGCGTACGATTGTCGGGAGTTCTTTGG
TCCGTGACTATTAAACACGATTACCTAACGGTGAATATGTGA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[13-120] 4.4E-25
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[16-118] 1.07E-24
ProSiteProfiles
RRM_dom (IPR000504) - T[38-115] 16.057
SMART
RRM_dom (IPR000504) - T[39-111] 4.9E-21
Pfam
RRM_dom (IPR000504) - T[40-97] 2.0E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RBM38_HUMAN 62.264 % 186 2.48E-58
RBM24_HUMAN 72.414 % 181 2.06E-56