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- Transcript 'Boleac.CG.SB_v3.S10....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S10.g00371.01.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
S10 [616,357 / 627,523]
Amino acid sequence
Length: 965
>Boleac.CG.SB_v3.S10.g00371.01.p
MLKLHKASPTYSGKKGYVEERAVDMPLKLDINRKLSARSDRVKCVDLHPTEPWILVSLYN
GNVHIWNTESQQIVKSFEVCDLPVRAARFVPRKNWVVTGSDDMLVRIFNYNTLERVHQFE
AHTDYVRSIAVHPTQPYILTSSDDMTIKLWDWDKKWACSQVFEGHTHYVMQIVVNPKDNN
QFASASLDRTIKVWQLGSTTPNFTLEGHDKGVNCVDYYSGGDKPYLISGADDRLVKIWDY
QTKTCVQTLEGHAQNVVCVNFHPELPIIMTGSEDGTVKIWHANTYRLETTLNYGLERVWC
IASLKGSNNVGLGYDEGTILIKLGREEPAISMDSNGKIIWAXHSEMQQANLKAMGDTEFK
DGERLPLAVKDMGSCEVYPQNVKHNSNGRFVVVCGDGEYIIYTAMALRNKAFGSALEFVW
ANESSEYAVRESGTTVKLFKNFKEKQSFKPDFGCEGIYGGHLLGIKTSQGLAFYNWETLE
LVRRIEIIPKDIYWSDNGDLVCIATSESFFILKYDQDKVAEAQENKELVTEDGIENTFDV
LGEIEETVKTGIWVGDCFIYTNSVNRLNYYVGGEIVTIAHLDRVLYLLGYIPRDNRLYLG
DKELNVVSYSLLLSVLEYQTAVMRKDFETADKVLPSIPKDQRTRVAHFLEKQNFRVQAMA
VTADPEHKFELAIGLGDMKVAYTLAKEAESQQKWKQLAEMATSKCEFALAQECLHQAQDY
GALLLLATSAGNSNMVKALAEGAQSGEKNNVAFLSYFVTGQKKKCLELLIETGRLPEAAF
FARTYMPSEVSRIVQLWKENLAQTNKKAAESLADPKQYENLFPQMKETLVAEQYLKATEQ
PRPADHYLQVPSNIERNILEESEGFEDVQGDVVQEPEIEPQVSIPLIDPDQKESKPDAPG
EGEPDGESQKAETTLEEPALQQHHHQISTGLNPATFDDLDLDIENLDLDDVDTSDINLED
ELLED
Nucleotide sequence
Length: 3,098
>Boleac.CG.SB_v3.S10.g00371.01.t
ATGCTAAAACTGCATAAAGCAAGTCCCACATATTCCGGAAAGAAAGGATACGTAGAAGAG
AGAGCGGTTGATATGCCGTTGAAACTCGACATCAATCGTAAATTGAGTGCACGCTCAGAC
CGGGTGAAGTGCGTGGATCTTCATCCTACAGAGCCATGGATTCTTGTTTCTCTATATAAT
GGCAATGTTCACATATGGAACACAGAATCACAGCAAATTGTAAAATCATTCGAAGTATGT
GATCTTCCTGTAAGAGCTGCAAGGTTCGTCCCAAGAAAAAACTGGGTGGTCACTGGATCT
GATGACATGCTGGTCAGGATATTCAACTATAATACGTTGGAGCGTGTCCACCAATTTGAA
GCTCACACTGATTATGTCCGATCTATTGCAGTCCATCCAACTCAACCATATATACTCACC
AGTAGTGATGATATGACGATAAAATTGTGGGATTGGGATAAGAAATGGGCTTGCTCTCAA
GTTTTTGAAGGCCATACACATTATGTCATGCAAATCGTTGTCAATCCCAAGGACAATAAC
CAGTTTGCCAGTGCCTCATTGGACAGAACAATAAAGGTTTGGCAGCTCGGCTCTACTACC
CCGAATTTCACACTCGAAGGTCACGATAAAGGTGTCAATTGCGTCGACTACTACAGTGGT
GGTGACAAACCATATTTAATTTCTGGTGCTGATGATAGGCTTGTGAAGATATGGGATTAC
CAGACAAAGACATGTGTACAAACTTTGGAAGGGCATGCTCAAAATGTTGTCTGTGTCAAT
TTTCATCCAGAATTACCAATCATAATGACTGGGTCAGAAGATGGCACAGTGAAGATATGG
CATGCAAACACATATAGACTTGAAACTACCTTGAATTATGGCCTGGAGAGAGTGTGGTGT
ATTGCATCTTTGAAGGGATCGAATAATGTTGGTTTGGGTTATGACGAGGGAACCATTCTT
ATTAAACTGGGTCGTGAAGAACCTGCAATATCAATGGATAGCAATGGAAAAATCATATGG
GCTAANCATTCAGAAATGCAACAGGCAAATTTGAAAGCCATGGGCGATACGGAATTCAAG
GATGGTGAACGTTTGCCACTAGCTGTGAAGGATATGGGCAGCTGTGAAGTTTACCCACAA
AATGTGAAACACAATTCCAATGGTAGATTTGTTGTNGTTTGTGGTGACGGGGAGTACATC
ATCTACACAGCCATGGCTCTTCGAAATAAGGCTTTTGGCAGTGCTTTGGAGTTTGTGTGG
GCTAATGAAAGCTCTGAGTATGCGGTGAGGGAGAGTGGTACAACAGTGAAGTTGTTCAAA
AATTTCAAAGAAAAACAATCTTTCAAACCCGATTTTGGTTGCGAAGGAATATATGGGGGA
CATCTCCTTGGTATCAAAACAAGTCAGGGTCTCGCATTTTATAATTGGGAAACACTAGAG
CTTGTTAGAAGAATTGAAATTATTCCTAAAGACATATATTGGTCCGATAATGGAGACTTG
GTTTGCATTGCGACTTCAGAATCATTTTTTATACTTAAATACGACCAAGATAAAGTTGCG
GAAGCTCAAGAAAATAAAGAGCTTGTTACAGAAGATGGAATCGAAAACACATTTGATGTT
CTTGGTGAAATCGAAGAAACCGTCAAAACNGGAATTTGGGTCGGTGATTGCTTCATTTAC
ACAAATTCCGTGAACAGATTGAATTATTATGTTGGTGGGGAAATAGTCACCATCGCTCAT
CTTGACAGAGTTCTTTACTTGTTGGGTTACATTCCTCGGGATAATCGTTTGTACTTGGGA
GATAAAGAACTCAATGTGGTTAGTTATTCTCTGCTGCTATCCGTTCTTGAATATCAAACT
GCGGTGATGCGAAAGGATTTTGAAACCGCAGATAAAGTCTTGCCGTCGATTCCCAAAGAC
CAACGTACAAGGGTTGCCCATTTTCTTGAGAAACAGAATTTCAGAGTACAAGCAATGGCA
GTTACGGCTGATCCAGAGCACAAGTTTGAACTTGCAATTGGTTTGGGTGACATGAAAGTT
GCCTACACACTGGCTAAAGAAGCTGAGTCACAACAGAAATGGAAACAGTTAGCAGAGATG
GCAACTTCCAAGTGTGAATTTGCGTTAGCGCAGGAATGTCTTCATCAGGCTCAAGACTAT
GGAGCCTTGCTGCTACTTGCAACATCAGCTGGCAATTCAAATATGGTCAAGGCATTAGCA
GAAGGAGCTCAGTCAGGAGAGAAAAACAATGTTGCTTTCTTGTCTTATTTTGTAACCGGC
CAAAAGAAAAAATGCTTAGAGCTTCTGATTGAAACAGGCCGGCTTCCTGAAGCAGCATTT
TTTGCCAGGACTTATATGCCAAGCGAAGTCTCAAGGATTGTGCAATTATGGAAAGAAAAC
CTTGCTCAGACCAACAAGAAAGCAGCAGAATCCTTAGCAGACCCGAAACAATATGAAAAC
TTATTTCCACAAATGAAAGAAACCCTCGTGGCGGAACAGTACTTGAAAGCTACTGAGCAA
CCTCGGCCAGCTGACCATTATTTGCAAGTTCCGAGCAACATTGAAAGAAATATTCTTGAG
GAGAGCGAAGGGTTTGAAGATGTCCAAGGGGACGTTGTACAGGAACCTGAAATTGAACCG
CAAGTCAGTATACCATTGATTGACCCAGATCAAAAAGAGAGTAAACCTGATGCCCCAGGA
GAGGGTGAGCCTGATGGTGAAAGTCAAAAAGCCGAAACAACCTTAGAGGAGCCCGCGCTG
CAGCAACATCATCACCAGATTTCTACAGGCCTCAATCCAGCTACGTTTGATGACTTGGAC
TTGGATATAGAAAATTTAGATCTTGACGATGTCGATACCTCGGATATAAATTTAGAAGAT
GAACTTTTGGAAGACTAATGGACTTTATTCATATTGTTTTGGAGATGAGAAGGATTTGCT
GCCGGTCATGGTCGTTTTAGACTCGTATACACTTGTAAATTATGATATATACCATGGAGA
GTTAGCCTGCGAGTCAGCAGTAGTCTTGTGGCAATAAATGAAGAGTNTTGAATCTGAACT
ATGTATTACACCTATTGCGAGAATAGCTATTGAAGCGG
| PIRSF |
COPB2 (IPR016453) - T[26-920] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[26-320] 2.85E-81 |
| SMART |
WD40_repeat (IPR001680) - T[28-67] 0.09 - T[70-109] 0.0064 - T[112-151] 2.8E-10 - T[155-195] 5.4E-8 - T[198-239] 1.2E-7 - T[242-281] 4.9E-10 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[35-324] 1.0E-112 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[35-290] 52.914 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[35-76] 9.539 - T[119-151] 14.485 - T[162-204] 12.046 - T[205-248] 13.316 - T[249-290] 15.889 |
| Pfam |
WD40_repeat (IPR001680) - T[39-67] 0.14 - T[84-109] 0.13 - T[116-151] 9.0E-7 - T[157-194] 0.0047 - T[202-239] 2.7E-6 - T[244-280] 1.5E-8 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[138-152] 3.1E-6 - T[182-196] 3.1E-6 - T[226-240] 3.1E-6 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[343-786] 7.5E-169 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 25.638 % | 248 | 3.71E-68 |
| COPB2_HUMAN | 71.444 % | 1450 | 0 |
| LIS1_HUMAN | 26.296 % | 119 | 1.64E-28 |