Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C3.199.v2....'
  2. Transcript 'KH2012:KH.C2.728.v1....'
  3. Transcript 'Boschl.CG.Botznik201...'
  4. Transcript 'KH2012:KH.C11.218.v1...'
  5. Transcript 'Boleac.CG.SB_v3.S117...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S117.g01418.01.t

Possible name(s)

NLE1; POC1B; PREB

Location

S117 [81,973 / 83,239]

Sequences

Amino acid sequence

Length: 328

>Boleac.CG.SB_v3.S117.g01418.01.p
MASLCKLDYPIYACEALDTNHVIVGGGGGASKTGVPNAVDILKIEKIGKKLQADPSERLE
LGNNAAMNIAVLNRDGFVRAWNTSDFSKRFFSKGHKDDVTDVDISPDGKYAVSVSRDGTA
IIWNSETGMKEVDLHSKWNSQMTTRSYRFRSCRYGTIVENPKVYALFTAHSPIRPGRRSD
SKAAQGCLTKWARKRANEGTVTGPLRPVILQYTGREAISSMCISSDGVYLGVGFMEGTVS
IYISFSLQCAKRINNVHSIFVTGLSFLPSSDVSIAGTCDAALVSVSADNQCKLSKLSSRT
MFPIWFALLLIFISLAAAAYLLYEMGVI

Nucleotide sequence

Length: 987

>Boleac.CG.SB_v3.S117.g01418.01.t
ATGGCATCATTATGTAAGCTCGATTATCCGATTTATGCTTGTGAAGCGTTGGATACCAAT
CACGTGATTGTTGGAGGAGGTGGAGGGGCATCAAAAACAGGAGTCCCCAATGCAGTGGAT
ATTCTCAAAATTGAGAAAATCGGAAAAAAATTACAAGCCGACCCGAGCGAAAGATTGGAA
TTGGGAAATAATGCTGCGATGAATATTGCAGTTTTGAACCGTGATGGTTTTGTTCGTGCT
TGGAATACTTCTGATTTTTCTAAAAGATTTTTCTCAAAAGGCCACAAAGATGATGTAACA
GATGTTGATATTAGTCCGGATGGGAAATATGCCGTATCAGTTTCGCGAGACGGGACAGCA
ATAATATGGAATTCTGAGACCGGGATGAAAGAAGTCGACCTTCACTCAAAATGGAACTCG
CAAATGACGACACGAAGTTATCGTTTTCGATCATGTCGTTACGGAACTATCGTCGAAAAC
CCCAAAGTTTATGCTCTTTTCACCGCACACTCTCCAATCCGACCAGGGCGTCGATCGGAC
AGTAAAGCGGCTCAAGGTTGTCTAACGAAATGGGCTCGAAAACGAGCCAACGAAGGGACA
GTTACGGGTCCTTTGCGTCCTGTAATTCTGCAATACACCGGCCGCGAGGCGATATCTTCA
ATGTGCATTAGCTCCGATGGAGTATATTTAGGAGTTGGGTTCATGGAAGGCACTGTATCT
ATTTACATTTCGTTTAGTTTGCAATGTGCAAAGCGTATTAATAATGTCCATAGTATATTT
GTGACAGGCTTGTCATTTTTGCCTTCGTCGGATGTGTCAATCGCTGGAACATGCGATGCG
GCACTTGTCTCTGTGTCGGCAGACAACCAATGTAAATTATCAAAACTGTCAAGCCGGACG
ATGTTTCCAATATGGTTTGCATTGTTGTTAATTTTTATAAGCCTTGCAGCTGCGGCATAT
CTCTTATATGAGATGGGTGTTATATGA

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[3-301] 1.2E-64
SUPERFAMILY
Quinoprotein_ADH-like_supfam (IPR011047) - T[69-144] 2.98E-22 - T[204-298] 2.98E-22
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[69-133] 13.633
SMART
WD40_repeat (IPR001680) - T[83-124] 1.5E-7 - T[204-243] 55.0
ProSiteProfiles
WD40_repeat (IPR001680) - T[92-133] 13.148
Pfam
WD40_repeat (IPR001680) - T[93-124] 1.8E-6
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[111-125] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PREB_HUMAN 30.314 % 140 1.83E-38