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- Transcript 'Boleac.CG.SB_v3.S11....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S11.g00990.01.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
S11 [338,555 / 341,697]
Amino acid sequence
Length: 557
>Boleac.CG.SB_v3.S11.g00990.01.p
MENRTVEVRGSNGAYYKAFLCDVLPTGILVTFENNWQPEKVIPFKEIRLAPMVESTSDFT
EGQEVEVHSRANDNEPCGWWHARIKMSKGEFFVIEYQSCEPKYTEIVTKDRLRPMNKNAS
VSQDYLKKVALDVAEDLHDFCAKYIDLHKDFEKSIGAILVRYNKESSKLDVIVSSEAAQK
RATIVSDLHFRSLRTKLQMLQKVEEASKQLEVTQQRAESCMERFSVDVDLMGLAIGTGGV
NIISARKIPGVVDIILDEDTHTFTVYGETKDAVLQAREILEFCEEEVVVPRAYVGKVIGK
KGATIQEMIDKSGVVRVRVVGDDENKEKELEPGMVPFRFVGIRESIKNAKALLEYHVANL
RDLDKLRMEQLSITQRIRQLDGGYTSTMPPTDGKANGETPRRRPYFQNRGRGGRRQNGSD
RDNLNSNSEVSISDTGSETGNESITDAKGNIKSKELVNNGFASQNQRNSSKKDQRNPNHN
RFEVLDGTGEDGVMGNTSGKESAHENDAPTNGTNTPANNPKGKRSNRYRNKKGNRENNQN
GLSNGDGHKANGAVPAK
Nucleotide sequence
Length: 2,468
>Boleac.CG.SB_v3.S11.g00990.01.t
AGGGAGCTCAGTTGTATACTTGTAATTTTATCTGATTGGAATCATCCTTGGATATGGAAA
ACAGAACTGTGGAAGTCCGTGGCTCTAATGGCGCCTACTACAAAGCATTTCTTTGCGATG
TATTACCAACTGGAATCTTGGTAACATTTGAAAATAACTGGCAACCTGAAAAAGTCATTC
CTTTCAAAGAGATTCGACTTGCGCCCATGGTGGAAAGCACAAGCGACTTTACTGAGGGTC
AAGAAGTTGAAGTTCACTCAAGAGCCAATGATAATGAACCATGCGGATGGTGGCATGCTC
GCATTAAAATGAGCAAAGGAGAGTTTTTTGTTATTGAATATCAATCCTGTGAACCAAAAT
ACACTGAGATAGTGACAAAAGATCGCCTTCGTCCAATGAATAAGAACGCATCAGTATCGC
AAGACTATTTGAAAAAAGTTGCTCTTGATGTGGCAGAAGACCTTCACGATTTTTGCGCAA
AATATATTGATCTACATAAAGATTTTGAAAAAAGCATTGGTGCAATATTGGTGAGATATA
ACAAAGAAAGTAGCAAACTCGATGTCATTGTTTCAAGCGAAGCTGCTCAGAAACGAGCCA
CCATTGTTTCCGATTTGCATTTTCGTAGTTTACGCACAAAATTACAAATGCTCCAAAAAG
TGGAAGAAGCATCTAAACAACTGGAGGTGACGCAACAACGAGCGGAATCTTGTATGGAAA
GATTTTCAGTGGATGTGGACTTGATGGGTCTTGCTATTGGAACTGGGGGCGTAAATATAA
TATCGGCCCGCAAAATTCCAGGAGTAGTGGATATTATACTCGATGAAGACACTCATACCT
TCACCGTATATGGAGAAACAAAAGATGCCGTCTTGCAAGCTAGAGAGATCCTTGAATTTT
GTGAGGAAGAGGTTGTCGTTCCCAGAGCATATGTCGGAAAAGTCATTGGTAAAAAGGGTG
CGACAATTCAAGAGATGATTGACAAATCTGGAGTTGTCAGAGTTCGCGTTGTCGGGGACG
ATGAAAATAAAGAAAAAGAATTAGAACCTGGGATGGTACCTTTTCGATTTGTTGGAATTC
GAGAAAGTATCAAAAATGCCAAAGCCTTGCTGGAATATCATGTTGCAAATCTACGTGACC
TTGATAAATTACGCATGGAACAACTGAGCATTACGCAACGTATTCGACAGCTTGATGGTG
GTTACACATCTACCATGCCACCGACGGATGGAAAAGCTAATGGTGAAACACCAAGGAGAA
GACCGTATTTTCAAAACCGTGGGCGTGGAGGGCGCCGACAGAATGGAAGTGATCGGGACA
ACCTGAATTCAAATTCAGAGGTTTCAATTTCAGACACTGGTTCAGAAACTGGTAACGAAT
CCATCACCGATGCAAAAGGAAATATCAAGTCCAAAGAGTTGGTCAATAATGGATTTGCTA
GTCAAAACCAAAGAAACTCGTCAAAGAAGGATCAGCGAAATCCAAACCATAACCGTTTTG
AAGTTCTTGACGGCACAGGAGAAGATGGCGTGATGGGAAATACCAGTGGTAAAGAAAGCG
CTCATGAAAATGATGCACCAACTAATGGCACTAATACCCCTGCTAATAACCCCAAAGGCA
AACGTTCGAACAGATATCGCAATAAAAAAGGGAACAGAGAGAACAATCAAAATGGTTTAT
CAAATGGCGATGGTCACAAAGCTAACGGTGCTGTTCCAGCCAAGTAGTGACCTTTCAAAT
TTGTCAACTTGCATGGGTTGTAGTACATGTTGCTGACTATGAAGGTATGACCATTATAGC
CGCAATATTGTCGAAACGTCAGACACAGATCTATTAAATACAACTATGTCTTCTCTGGTA
GCAAGCAGCTTCATCTGTGTAGTGCATGTGGTAGGATATTCACAACTGATCATTCATTTG
TGTGATATTTCTTAAAAGCTAAATTCTTTGTTTAATACAGTGTGTAAACCTTTTGTGCTT
TTCAGACTAACCGTTAGGTGTCACTATAGAGGAGCTCGACCGGTTTCTGTAATAATCGCA
CCTTGGTATGTGAATTTCACGGCTAGTATTTATTCTTTGTACTGAGACTTTCAGTTACTG
TTGTTTTCATTGTTGCAAAGACGCTTTTGTTTTTAATTATATTGTGAGAGCCACTGTGGT
AAGACTGATCTCGAATCCCTGTTTGCCATAATCAACTCCAGTTGTTGGGATGACGTGTAC
CTGACTTCTTTCAGCCTTGTACTGTGACCACACTCAGTTCCAATTCAACTACCAAGGCTC
ATGGTTATTGGTTATATGTCATGCTGGTTTTGTGGCTTGACATGTATATAAGTCACACCG
ACTAAGTGTTACATTTTGCGATGGCAATCGCGTTCTGATTTGTGCTCACACACAAGTACC
CAATTTCTCTACAGTGCTTACCATACCTTGTACGATTTCTGTGTTTTTCGAAGGACACTA
TTTTTTCG
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[4-50] 10.07 - T[63-115] 24.95 |
| Pfam |
Agenet-like_dom (IPR008395) - T[62-116] 1.9E-7 |
| SMART |
KH_dom (IPR004087) - T[218-284] 0.0088 - T[285-358] 4.4E-5 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[219-281] 1.4E-24 - T[282-361] 1.3E-24 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[220-286] 1.16E-10 - T[285-363] 1.32E-10 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[285-354] 3.4E-11 |
| Pfam |
FXMRP1_C_core (IPR022034) - T[356-474] 2.2E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 55.263 % | 435 | 1.43E-146 |
| FXR2_HUMAN | 53.034 % | 414 | 7.14E-138 |
| FMR1_HUMAN | 54.167 % | 366 | 1.04E-119 |