- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Boleac.CG.SB_v3.S127...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S127.g02004.01.t
Possible name(s)
HMGB1; HMGB2; HMGB3
Gene model
Location
S127 [187,900 / 189,328]
Amino acid sequence
Length: 202
>Boleac.CG.SB_v3.S127.g02004.01.p
MGKKDPNKPRGKMTAYAFFVQTCRSEHKKAHPDEQVVFAEFSRKCAERWREMNVKEKKIF
NDMAGRDKLRYDKEMATYIPPAGEVKKPVKRKKDPNAPKRPQSAFFLFCGDRRAEVKKAN
PSFTVGDIAKSLGKMWADTKPDEKSKYDVLAKSAKEKYTEQLAAYKDKQKHEGSAAKKQR
KESTSSSASSSGSDSGSDQDSD
Nucleotide sequence
Length: 1,212
>Boleac.CG.SB_v3.S127.g02004.01.t
TCTCAAGTATCAGTCAGTTATCTTAGATCGCCACTGCCGCCAATAAATAAAAATGGGAAA
GAAAGACCCCAACAAGCCCCGAGGAAAGATGACGGCGTACGCTTTCTTCGTTCAAACTTG
CCGCTCAGAACACAAAAAGGCTCACCCCGATGAGCAAGTGGTGTTTGCCGAGTTCTCGAG
GAAGTGCGCAGAAAGATGGCGGGAAATGAATGTAAAAGAAAAGAAAATTTTCAATGATAT
GGCTGGTCGGGATAAACTGAGGTATGATAAAGAAATGGCAACCTACATACCACCAGCTGG
TGAAGTAAAAAAGCCGGTCAAGAGAAAGAAGGATCCAAACGCCCCCAAACGACCACAGTC
AGCATTCTTCTTGTTCTGTGGCGATCGTCGTGCAGAAGTGAAAAAAGCCAACCCATCCTT
TACAGTGGGAGACATTGCCAAATCGCTTGGAAAGATGTGGGCTGATACAAAACCGGACGA
AAAATCAAAGTATGATGTTCTTGCTAAATCAGCAAAAGAAAAGTATACAGAGCAACTCGC
TGCCTATAAAGATAAGCAGAAACATGAAGGAAGCGCAGCCAAGAAGCAACGCAAGGAGTC
AACCTCATCATCAGCATCATCATCAGGAAGTGACAGTGGCAGTGATCAAGACAGCGATTG
AAAAGAGAAATTATAGTTTGCTTCAAGCCATTGCTTTTGGAGACAGAAAGCTTTCCGCTT
CTCCCTGGCTGACTTGCTGTCAGATTTGTACATACAGTCGAAGTTTTTAATGCCGGTATT
TTGTAGTTTGCATAACTAACTGATGGTATTGTGATTTGTACTCCTTCACTGATCTCATGC
AAAACAGTAATTCTGAGGCTTGGACTTCTGGACAAGTGTCAAATTCGAATTACTCATTCT
TCGGTGACACCTCAGTAATACCCGTTGAATGAATTATGACCAATAGTTTTGACCTGGAAT
GCAAGTTTTTGCTAGCAGGTGAAAGTTTTTATTATTGTTGTTCCTTTGTGTGATACTTTG
GTTTGTGAGGTTCATTTTCTACTTGATGCTGTGGGTCATGACAAAATGGACTAGAATACT
AGTTACGAACTATTTGCTCCCTCAACCGCCATGATTATTGCTGTATCCACTTGGNGGCAT
ATGAAGACTTCGTTGTTGACACCAAACGCATGGAAACCTCTTGAGAAATAAACCCGTTAT
GCTGTTTTAGTA
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[1-80] 1.7E-31 - T[84-169] 3.5E-26 |
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[2-83] 1.31E-23 - T[90-171] 2.09E-25 |
| Pfam |
HMG_box_dom (IPR009071) - T[6-78] 5.4E-21 - T[98-166] 5.6E-22 |
| SMART |
HMG_box_dom (IPR009071) - T[8-80] 9.2E-20 - T[97-167] 4.9E-22 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[9-79] 15.264 - T[98-166] 18.234 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMGB1_HUMAN | 59.412 % | 202 | 4.27E-66 |
| HMGB2_HUMAN | 55.814 % | 188 | 7.49E-61 |
| HGB1A_HUMAN | 56.742 % | 191 | 8.0E-62 |