- Transcript 'Boleac.CG.SB_v3.S130...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S130.g02200.01.t
Possible name(s)
COL4A2; COL4A3; COL4A6
Gene model
Location
S130 [10,856 / 22,537]
Amino acid sequence
Length: 1,791
>Boleac.CG.SB_v3.S130.g02200.01.p
LAYIQRKHRRSVKGPCNGRDCSNLGPCASCISEKGSRGIPGPRGETGGVGNPGFPGPEGL
MGPKGEKGYPGQSGRRGLPGFQGARGRPGYPGINGVPGHPGEQGPVGYPGANGCNGSVGD
LGPKGNLGLSGLPGLDGRDGPKGEKGEPAFIDDEFLEKGQPGEAGPTGPAGRPGAPGIQG
PMGPMGYDGPPGPPGPPGRKGERGSNGAEGKGYAGLKGDKGESGSAGGLPETDFQKERPP
GTSEPAVGRPGRNGSKGDRGMKGERGYPGQLGPLGYTGMQGEKGEKGIRGFPGPRGLPGV
AGSNGYDGRKGAKGEQGRPGGVGNDGFKGERGQKGAEGQTGERGIDVRHFCIPGLPGING
SAGLQGAKGQRGEPGLPGESVKGEKGKDGMDGLPGLRGLQGSRGRPGTPGSLIYDGDKVV
GATGPPGELGQKGVPGLKVVFRPTVNSPSRQKKAQNIKLFSLCLGAMGLQGLVGMKGQKG
GECDCSDAFGAEGEQGPPGPPGLQGRDGLPGRNGRDGGRGSPGMPGPSGSDGPQGPRGSV
GERGPKGAKGEQAVPEPVVAEKGEPGMTGGQGPPGLNGIPGRPGAVGHQGPLGEKGERGP
IGKPGKPGPMGPKGDVGNPGRPGRDSEGPPGPPGSKGEPGMPGLSGAVGITGPPGPPGDA
LSLESIPPGEKGQTGPPGVPGQQGEKGEKGDIGLPGVDGLVGALGIDGEAGEAGLPGPPG
PKGFTGERGERGPEGPPGPDGTPGVDGIDGAFGPKGPKGEAGVSDIRGPAGDLGPKGQPG
ADGEKGEQGVKGSTGXPGRTGPEGPEGQTGDQGAPGASGRPGPPGQKGESALTGLQGPPG
EPGPIGPVGAEGPPGLKGDVGGPGPPASGRFKGSKGRKGAVGAPGKDILVNMXPVTCEKG
QVGPXGDNGXEGPQGEPGLPGIPGMXGSTGPMGETSLTLNWSPPKGMPCPPGSRGIAGPK
GVTGQAGEDGKPGKQGPQGNPGLQGMIGLQGPKGERGPPGEPMSEEVLNGLMDSAHGIKG
QPGEKGAIGPRDLQPNSDKNLIAFFLCSCLKAKFFPIGMVGMRGPKGMRGASGEKGWKGE
PGLSIKGLPGLPGQIGRDGLDGEPGSPGPLGRRGQKGPEGEQGFMGRPGRPGDRGMKGEL
GKSGPKGLPGRDGLDGSVANKGVKGMQGSAGLPGLVGIPGLQGMKGSRGDRGASGPTGLX
GMTGMDGKPGLPGLTGLPGRDGLDGPIGRKGDRGDRGPKGSLGRNGEVGERGQKGEPGTG
NVFGPPGEKGASGYYYSKFGFCLPNERDLPPFVLQILLHLFKCVAGSPGQKGLQGLPGAV
GPEGPSGPRGKIGLRGFPGGYGPPGPQGVPGFPGRKGQAGMDGIAGLPGKPGLNGLEGMR
GLPGEQGAKGDTGPKGQPGFPGITGVAGQIGETGPDGLEGEKGDQGQKGARGXLGLPGRE
GAKGQKGLQGQQGRPGLQGRTGDRGPSGPPGRVRDSGPPPPGAKGEKGRSGIPGLQGKTG
QPGYRGSRGEKGEPGSPGLNGINGRPGLPGQAGNVGPKGFAGIPGTSGADGPIGPKGLPG
NPGPYRPAGHLIVRHSQTVTXPTCPEGTDVLWTGYSMLHLSGNEKAHGQDLGSTGSCMRM
FNTMPFLYXTVNNVCNYASRNDKSFWLATTASIPMMPVEQGIEEYISRCAVCESPNMAIA
VHSQSASIPDCPDGWIGLWIGYSFVMHTAVGADGSGQSLASPGSCLEDFRATPFIECNGE
RGHCFFYNNQYSFWLTTIMDREQFSTPEKQTLKAGSLRTRISRCQVCRKMV
Nucleotide sequence
Length: 5,376
>Boleac.CG.SB_v3.S130.g02200.01.t
TTGGCTTATATTCAGAGAAAACATCGACGGAGTGTCAAGGGACCCTGCAACGGCAGAGAT
TGCAGTAATCTCGGACCATGTGCGTCTTGTATATCGGAAAAAGGTAGCCGGGGCATTCCA
GGACCCAGAGGCGAAACAGGTGGTGTTGGAAATCCAGGATTTCCTGGTCCGGAAGGTTTA
ATGGGACCAAAAGGAGAAAAGGGCTATCCTGGGCAATCCGGGCGCAGAGGACTTCCTGGC
TTTCAAGGAGCACGTGGCAGACCTGGCTATCCAGGAATCAACGGTGTTCCAGGACATCCT
GGGGAACAAGGACCTGTCGGATACCCAGGAGCTAATGGCTGCAATGGAAGTGTTGGAGAC
TTGGGCCCTAAAGGAAATCTCGGCCTTTCAGGATTGCCAGGTCTTGATGGAAGGGATGGA
CCGAAAGGAGAGAAAGGAGAACCTGCATTCATTGATGATGAATTCCTCGAGAAAGGTCAA
CCTGGAGAAGCTGGCCCTACTGGTCCAGCGGGAAGGCCTGGAGCACCTGGAATACAAGGC
CCCATGGGACCTATGGGTTATGATGGTCCACCAGGTCCACCTGGTCCACCTGGAAGAAAA
GGTGAACGTGGAAGCAATGGTGCGGAAGGAAAGGGATATGCAGGGCTCAAAGGCGATAAG
GGTGAATCTGGATCTGCAGGAGGACTTCCAGAAACAGACTTTCAGAAAGAGCGTCCACCT
GGAACGAGTGAACCAGCTGTTGGTCGTCCAGGAAGGAATGGATCCAAGGGNGACCGAGGC
ATGAAAGGCGAGCGAGGGTACCCTGGACAACTGGGACCTCTGGGATACACAGGAATGCAA
GGTGAAAAAGGAGAAAAGGGAATCCGAGGATTTCCAGGACCAAGAGGACTGCCTGGTGTC
GCAGGATCAAATGGTTACGATGGCAGAAAGGGAGCCAAAGGTGAGCAAGGACGGCCTGGT
GGAGTTGGTAATGATGGATTCAAAGGAGAAAGAGGACAGAAAGGAGCGGAAGGACAAACA
GGGGAGAGGGGCATTGATGTAAGGCACTTTTGTATTCCTGGGTTACCTGGAATCAATGGC
AGCGCTGGTTTGCAAGGCGCAAAAGGTCAACGTGGTGAGCCTGGTTTGCCAGGTGAATCA
GTAAAGGGAGAGAAAGGAAAGGATGGAATGGATGGATTGCCAGGGCTACGTGGTTTACAG
GGATCCAGAGGCCGACCTGGCACCCCTGGATCTTTGATTTACGATGGAGATAAAGTAGTT
GGTGCTACAGGACCGCCAGGGGAGCTTGGACAGAAGGGAGTACCGGGTTTGAAAGTAGTA
TTTAGACCTACTGTGAATAGCCCGAGCAGACAAAAGAAGGCCCAAAATATTAAACTTTTT
TCACTCTGTTTAGGTGCGATGGGGTTACAAGGTCTTGTGGGCATGAAAGGTCAAAAGGGA
GGGGAATGCGACTGCTCTGATGCTTTTGGAGCAGAAGGTGAGCAAGGTCCTCCTGGCCCA
CCGGGTTTACAAGGAAGAGATGGCTTACCAGGAAGGAATGGAAGAGATGGCGGAAGAGGT
TCACCTGGCATGCCTGGTCCCAGTGGAAGCGACGGTCCACAGGGTCCCAGAGGTTCGGTT
GGTGAACGAGGGCCTAAAGGAGCAAAAGGAGAGCAAGCAGTTCCAGAACCTGTTGTGGCG
GAGAAAGGAGAGCCTGGAATGACGGGAGGACAAGGTCCCCCTGGATTGAACGGAATACCT
GGACGGCCTGGAGCTGTTGGCCATCAAGGTCCTCTTGGAGAAAAGGGTGAACGAGGACCG
ATTGGAAAGCCGGGCAAACCAGGGCCAATGGGACCAAAAGGTGATGTAGGAAATCCTGGC
AGACCAGGTAGAGACTCTGAAGGGCCACCCGGACCACCTGGTTCAAAGGGTGAGCCTGGC
ATGCCAGGACTCTCTGGAGCTGTCGGCATTACGGGACCGCCAGGTCCACCTGGAGATGCT
CTGTCCTTAGAAAGTATTCCACCTGGAGAGAAGGGGCAAACTGGACCGCCCGGTGTACCA
GGTCAGCAAGGCGAGAAAGGTGAAAAGGGAGATATCGGTCTACCCGGCGTTGATGGACTT
GTTGGAGCATTGGGTATCGATGGTGAAGCTGGTGAAGCAGGCCTACCAGGTCCTCCTGGA
CCAAAAGGATTTACTGGCGAGCGTGGTGAAAGAGGACCAGAAGGACCACCCGGTCCTGAT
GGAACACCAGGAGTAGATGGAATTGACGGTGCATTCGGGCCTAAAGGACCCAAAGGAGAG
GCAGGTGTCTCAGATATACGTGGACCGGCTGGTGATCTTGGACCNAAGGGCCAGCCTGGT
GCGGATGGAGAGAAAGGAGAGCAGGGAGTTAAAGGATCGACAGGTNCTCCTGGGCGAACG
GGTCCGGAAGGACCAGAAGGACAAACGGGTGACCAAGGAGCACCTGGAGCTTCAGGAAGA
CCTGGACCACCTGGTCAAAAAGGCGAATCTGCTTTAACTGGACTACAAGGTCCGCCGGGA
GAACCTGGTCCTATAGGCCCTGTTGGTGCAGAAGGGCCACCAGGGCTAAAAGGAGACGTG
GGTGGCCCAGGACCACCTGCAAGTGGAAGATTTAAAGGCTCAAAGGGCCGTAAAGGAGCT
GTGGGAGCCCCAGGTAAAGACATACTCGTAAATATGNTGCCTGTGACCTGTGAAAAGGGT
CAAGTTGGACCANCTGGAGACAATGGCNAAGAAGGACCACAAGGAGAGCCTGGATTACCT
GGTATACCTGGAATGNTGGGATCGACTGGACCTATGGGTGAGACTTCTCTGACGCTAAAT
TGGTCGCCACCAAAAGGCATGCCATGTCCTCCAGGAAGTCGTGGAATTGCCGGCCCAAAA
GGTGTAACTGGTCAAGCTGGAGAAGATGGTAAACCAGGCAAACAAGGGCCACAAGGAAAT
CCAGGATTACAAGGTATGATTGGTTTGCAAGGACCTAAAGGAGAAAGAGGACCTCCAGGA
GAGCCNATGTCTGAAGAAGTTCTTAACGGTTTGATGGACAGTGCTCACGGCATAAAAGGT
CAACCTGGAGAAAAGGGAGCAATTGGTCCCAGAGATTTACAGCCAAATAGCGATAAAAAT
TTGATCGCATTCTTCTTGTGTTCTTGCCTCAAAGCAAAATTTTTTCCAATAGGTATGGTT
GGAATGAGAGGCCCAAAAGGCATGAGAGGTGCATCTGGAGAGAAAGGCTGGAAGGGAGAA
CCAGGACTGTCAATCAAAGGTCTACCTGGTTTACCAGGACAAATTGGTAGGGATGGTCTG
GATGGTGAGCCTGGGTCACCTGGACCATTGGGAAGACGTGGCCAGAAAGGCCCTGAAGGG
GAACAAGGCTTCATGGGCAGACCTGGAAGACCTGGAGATCGTGGAATGAAAGGTGAGCTT
GGGAAATCTGGTCCAAAAGGTCTTCCTGGAAGAGATGGTCTGGATGGGAGTGTTGCAAAT
AAAGGAGTGAAAGGAATGCAAGGTTCAGCTGGACTACCGGGACTTGTTGGTATTCCTGGT
TTGCAAGGAATGAAAGGCAGTAGAGGTGACAGAGGAGCCTCTGGACCTACAGGTCTTNCG
GGGATGACTGGCATGGATGGTAAACCTGGTCTTCCTGGATTGACGGGCTTGCCTGGGCGA
GATGGTTTGGATGGTCCTATTGGGCGTAAAGGAGATAGAGGTGACAGAGGTCCCAAAGGT
TCACTTGGTCGGAATGGCGAAGTTGGAGAGCGGGGGCAGAAAGGAGAACCGGGCACTGGA
AATGTCTTCGGTCCCCCTGGTGAAAAAGGAGCATCAGGTTATTATTACTCCAAATTTGGG
TTTTGCTTGCCGAATGAAAGAGATTTGCCTCCCTTTGTTTTGCAAATTTTACTTCATTTG
TTCAAATGTGTTGCAGGCTCACCTGGACAGAAAGGGCTGCAAGGGTTACCAGGTGCTGTT
GGACCGGAAGGTCCATCAGGACCACGGGGGAAGATTGGTCTAAGGGGTTTCCCTGGTGGT
TATGGTCCTCCAGGACCACAAGGTGTACCAGGATTTCCTGGACGGAAAGGACAAGCAGGA
ATGGATGGTATTGCAGGGCTACCAGGAAAACCAGGTTTGAATGGTCTAGAAGGAATGAGA
GGATTGCCTGGAGAACAGGGAGCAAAGGGAGACACGGGACCTAAAGGACAACCTGGATTC
CCTGGAATTACTGGTGTCGCTGGACAAATTGGAGAAACGGGTCCTGACGGACTTGAAGGA
GAGAAGGGAGATCAAGGTCAAAAAGGAGCCCGAGGTANTCTTGGTTTACCAGGCAGAGAA
GGTGCAAAGGGTCAAAAAGGATTACAAGGGCAACAAGGCAGACCCGGTTTACAAGGTAGG
ACTGGTGACAGAGGTCCATCTGGTCCTCCGGGAAGAGTGCGGGATTCTGGACCTCCACCA
CCTGGCGCAAAAGGAGAAAAGGGAAGGTCGGGAATACCGGGGCTACAGGGAAAGACTGGT
CAACCAGGATACAGGGGTTCCCGTGGAGAAAAGGGTGAACCAGGTTCACCTGGGTTAAAT
GGCATAAATGGACGTCCAGGTTTGCCAGGACAGGCAGGCAATGTTGGACCAAAAGGATTT
GCCGGAATTCCTGGAACTTCAGGCGCTGATGGGCCAATTGGTCCNAAGGGATTGCCGGGC
AATCCAGGTCCATATAGGCCCGCTGGACATTTGATAGTTCGTCACAGTCAAACTGTAACA
NCTCCAACTTGTCCCGAAGGAACTGATGTACTATGGACTGGATACAGCATGTTGCATCTC
TCAGGAAATGAGAAAGCACATGGACAAGATCTAGGTTCTACTGGATCATGCATGAGAATG
TTCAATACAATGCCATTCTTGTATTGNACAGTCAATAATGTATGCAATTACGCCTCAAGA
AACGATAAATCGTTCTGGTTGGCCACAACTGCTTCTATCCCTATGATGCCTGTGGAACAA
GGGATTGAAGAGTACATCAGTCGATGCGCTGTTTGTGAATCTCCAAACATGGCCATAGCC
GTTCACAGTCAAAGCGCCAGCATACCAGACTGTCCTGATGGATGGATTGGCCTGTGGATT
GGATACAGCTTTGTTATGCACACTGCAGTGGGAGCCGATGGCAGTGGACAGTCGCTGGCA
AGTCCAGGATCATGTTTGGAAGATTTCCGTGCCACACCTTTTATTGAATGTAACGGCGAA
AGAGGACATTGCTTTTTCTATAACAATCAATATTCGTTCTGGTTAACAACNATCATGGAC
AGAGAGCAGTTCTCTACTCCTGAAAAACAGACTTTGAAGGCCGGTAGCCTTCGAACAAGA
ATCAGTCGATGTCAAGTTTGCAGGAAAATGGTTTAA
| Pfam |
Collagen (IPR008160) - T[35-92] 1.5E-8 - T[91-147] 2.2E-8 - T[158-210] 8.4E-8 - T[248-305] 2.5E-9 - T[293-344] 3.9E-7 - T[493-551] 1.2E-7 - T[566-623] 4.5E-8 - T[602-659] 5.1E-7 - T[668-723] 6.0E-8 - T[768-826] 1.2E-8 - T[945-1002] 1.4E-8 - T[1099-1157] 3.1E-7 - T[1165-1221] 2.7E-8 - T[1216-1273] 2.2E-6 - T[1306-1363] 3.9E-8 - T[1363-1421] 4.2E-9 - T[1414-1472] 1.3E-7 - T[1481-1533] 4.6E-8 - T[1509-1564] 3.4E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1566-1791] 3.4E-106 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1569-1675] 9.1E-56 - T[1676-1790] 6.6E-68 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1569-1791] 107.573 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1571-1673] 9.1E-33 - T[1678-1788] 4.5E-42 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1571-1676] 5.65E-38 - T[1677-1789] 4.0E-44 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 42.174 % | 529 | 1.91E-158 |
| CO4A3_HUMAN | 37.569 % | 401 | 1.57E-114 |
| CO4A6_HUMAN | 41.23 % | 649 | 0 |