- Clone 'mae25b18' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C3.566.v1....' >
- Transcript 'KH2012:KH.C1.558.v1....' >
- Transcript 'Boleac.CG.SB_v3.S132...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S132.g02287.01.t
Possible name(s)
SNRNP40; WDR5; WDR5B
Gene model
Location
S132 [263,028 / 269,495]
Amino acid sequence
Length: 310
>Boleac.CG.SB_v3.S132.g02287.01.p
MSVLAEKRRLQSSALIPAKKPRNELILSGGASGQNALVQRGPPRTSSLLAPIMLLTGHDA
EICSAKFHPEGEVLASAGYDRSIFLWTVYGECENYYVIKSGHKGAILELNFNTDGSNLFT
ASSDKTIGMFDVETGERLKRMKGHEAVVNSCSSSRRGDQLVVSGSDDCSIKVWDIRNDRT
TMSLRGHTDTITGLMLSADGNFLLSNSMDSTLKSWDIRPYAPQERRLRVFMGHQRNFEMN
LLRCSWSPDGKRVAAGSADRFVYVWDSHTAQLMYKLPGHAGCVNEVSFHPKERIIVSCSS
DKQIYLGELQ
Nucleotide sequence
Length: 1,284
>Boleac.CG.SB_v3.S132.g02287.01.t
TTGTACCTACAGTATATACAAAATACATATTGCCGCAACACAGTACTGTGATAAGCCTAT
GGACTGAAAATGTCTGTTCTTGCTGAAAAGAGAAGACTTCAATCATCTGCGTTGATACCT
GCGAAAAAGCCAAGAAATGAACTGATATTGAGTGGTGGAGCCTCCGGACAGAATGCGCTG
GTGCAGAGGGGTCCTCCAAGAACATCAAGTTTACTCGCTCCAATTATGCTGCTGACTGGC
CATGATGCAGAAATATGTAGTGCCAAGTTTCACCCAGAGGGAGAAGTTCTTGCATCTGCG
GGATACGATAGATCAATATTCTTGTGGACAGTTTATGGAGAATGTGAGAACTACTATGTC
ATAAAGAGCGGTCATAAAGGTGCCATTTTAGAACTCAATTTCAATACAGATGGAAGCAAC
CTGTTTACTGCAAGCTCTGATAAAACTATTGGAATGTTTGATGTCGAGACTGGAGAACGA
CTGAAGCGAATGAAAGGACATGAAGCTGTGGTCAATTCGTGCTCATCATCACGTAGAGGC
GACCAGCTTGTAGTTTCCGGCAGTGACGATTGCAGCATCAAGGTTTGGGATATACGAAAT
GACAGAACGACCATGTCATTGCGAGGCCACACAGATACTATCACTGGGTTGATGCTTAGT
GCCGATGGAAATTTTTTACTATCAAACTCCATGGACAGCACGTTGAAGTCATGGGATATT
CGGCCGTATGCACCGCAAGAAAGACGCCTGAGAGTATTTATGGGCCATCAAAGAAATTTT
GAAATGAATCTACTCAGGTGCAGCTGGTCACCCGATGGAAAAAGAGTTGCAGCCGGCTCT
GCAGACAGGTTTGTGTATGTGTGGGACTCGCACACAGCTCAACTGATGTACAAACTTCCT
GGACATGCTGGCTGTGTTAATGAAGTCTCCTTCCACCCAAAAGAACGAATCATTGTATCA
TGCTCCAGTGACAAGCAAATTTACCTTGGAGAGCTCCAGTGATAGGATGGATCAGAAAAA
CGGAAGCGGTTTCATGTGTTATCTCCCTGGCGTCCACAACATAGGTGAGATTGTCCAAAC
GATGGGAGATCATATTGACGAGGCGGTTAGCGGGTTGACCGGTCCGCTATGCACTTTTGT
AATTGCCTGCATTGTCATTACAGTACGTCATGATTTCAAACTGTGGGCACTCGTGACGAT
TGGAGTCTGGGTGAAAATGCTTAGGCTTGGCTGTTAGCTCTTGTGCGCATTGTGCCAGAA
TATTCAAACCGCCGTGTTACGCTG
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[3-166] 6.4E-26 - T[169-310] 3.4E-46 |
| SMART |
WD40_repeat (IPR001680) - T[48-87] 8.3E-7 - T[91-131] 0.0019 - T[134-174] 1.4E-8 - T[177-216] 4.6E-6 - T[223-266] 2.8E-6 - T[269-308] 1.5E-4 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[50-305] 8.24E-69 |
| Pfam |
WD40_repeat (IPR001680) - T[52-86] 1.8E-5 - T[100-131] 0.15 - T[137-174] 5.9E-6 - T[181-216] 1.1E-4 - T[227-266] 2.4E-5 - T[271-306] 0.001 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[55-310] 52.229 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[55-88] 13.583 - T[99-140] 12.447 - T[141-183] 13.316 - T[184-218] 14.051 - T[245-275] 10.943 - T[276-310] 10.843 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[161-175] . - T[253-267] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[161-175] 1.1E-6 - T[203-217] 1.1E-6 - T[253-267] 1.1E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 29.091 % | 138 | 2.42E-38 |
| WDR5B_HUMAN | 28.956 % | 132 | 4.35E-36 |
| SNR40_HUMAN | 51.977 % | 387 | 2.46E-135 |