Aniseed - Transcript Card

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S157.g03253.01.t

Possible name(s)

LPP; TRIP6; ZYX

Gene model

Boleac.CG.SB_v3.S157.g03253

Location

S157 [199,437 / 205,478]

Sequences

Amino acid sequence

Length: 353

>Boleac.CG.SB_v3.S157.g03253.01.p
MDATLNWLDDELSALNDAEAAMGKITFESAFPDIRDNGNTTESGNGKVTHSTALPKSQTS
VGHVRSSKKRSEKPRKPVEEPKQIEPTRDPVIPVPETKPEKSFPTLNIGLDDTILPSFDT
DMSLRYTSEPSASQEDELEFYTKSLIDKMNSPGDKDMYGYCGKCNGIVEGEKTGCKALDK
IFHVDCFRCKTCENLLHGSQFYVVEKDTFCETCYMNSLEKCTVCSEVITDRILRATGKPY
HPACFNCVVCAKMLDGVPFTVDVTNQIHCVDCFHKKFAPXCSVCNEPIMPEDELGEAVRI
VALDRSFHVDCYRCEKCGMNLSSXESGCFPLDGRILCRDCNTAMVQELSQNLK

Nucleotide sequence

Length: 1,705

>Boleac.CG.SB_v3.S157.g03253.01.t
TCGGGTATTTCTTTCTGCACAAAGGTATTAATTAACAAACGTACCGTAATCTAATTTTTT
ACAAGTGATCATTTGGTTTTTCCTCCGATTACCAAGTAGGCGTACGTTGTTCACTGGCAG
TTGAGATGGATGCAACTTTAAACTGGTTGGACGACGAACTGTCAGCTTTGAATGATGCCG
AAGCAGCGATGGGAAAAATTACTTTCGAGAGCGCATTTCCTGACATCCGGGACAATGGCA
ATACAACCGAATCTGGTAATGGGAAAGTGACACATTCAACTGCTCTTCCAAAGAGCCAGA
CAAGCGTAGGTCACGTCAGGTCTAGCAAAAAGCGTTCTGAGAAACCAAGGAAACCCGTCG
AAGAACCTAAACAAATAGAACCGACTAGAGATCCTGTTATTCCAGTTCCAGAGACAAAAC
CTGAAAAATCTTTCCCGACTCTNAACATTGGATTAGACGACACAATTTTACCATCATTTG
ATACGGACATGTCGCTACGTTACACATCAGAACCATCTGCCAGCCAAGAAGATGAATTGG
AATTTTACACCAAGTCACTTATCGATAAAATGAATAGTCCTGGGGACAAAGACATGTATG
GCTACTGTGGAAAATGCAATGGTATCGTTGAAGGGGAAAAAACCGGCTGTAAAGCATTGG
ATAAAATATTTCATGTCGACTGCTTTCGTTGTAAAACATGTGAGAACCTTTTGCACGGAT
CTCAGTTTTATGTTGTTGAAAAGGATACATTTTGTGAGACATGTTACATGAATTCTCTTG
AGAAATGCACAGTATGTTCGGAAGTTATCACTGACAGGATTCTAAGAGCTACAGGGAAGC
CCTACCATCCTGCATGTTTCAATTGTGTGGTGTGCGCTAAAATGTTGGATGGTGTGCCAT
TCACGGTTGATGTCACAAATCAAATTCATTGTGTTGACTGTTTTCACAAAAAATTCGCTC
CAAANTGTTCNGTGTGTAATGAGCCTATCATGCCAGAGGATGAACTTGGGGAAGCTGTCC
GTATTGTTGCCTTGGATAGGAGTTTCCACGTTGACTGCTATCGATGCGAAAAATGCGGAA
TGAATCTTTCGTCCAANGAGAGCGGTTGCTTCCCGTTGGATGGTCGTATCTTGTGCAGGG
ATTGCAATACAGCCATGGTGCAAGAACTGAGTCAAAATCTCAAATAATTTTTCAACTCCT
AACATTTTATGAAGACACTTCTAATTCATCGTTTTAAACTACGTAATGCTTANGTCGTNC
TTTTTCACGAACTACCAAATTTCCAACCGAACTTCGGTCCTTTCCCTCTTGACAACGTAA
CAGTTGGTGCTGCCGGTTATATAGCTTACTGCCATAATTGGGTTTCCGGTGCAAACGTCC
TTGTTTTAGCCCTACAGTCACGGTGTCGGTGATGCTGATCCTGTGATCTGGCGGGGAAAG
TCCTCCACACGACACAAAAAAGTATAAAATCTAATTTTTTTCTAATAATTAGGCTACTCC
TTTGTTGTAAATTCATCTGTCCTCATCGGACGTACAAATATATTTTGCGGTTGTGGTACA
AATAGTTCGCAGTCCATTCGAATCGTGTTGAGTTGCAGCATCTGCCAATCAGTCTATTTA
GCNTTGCCTGAAATAAAGTATTATACATAGCGGTTGTGTTGATTATTACCGTGAGTGCAG
ATATACACTGGCAACGGAGTACTCG

InterProScan

ProSiteProfiles	Znf_LIM (IPR001781) - T[159-220] 12.405 - T[221-278] 8.118 - T[279-347] 13.494
SMART	Znf_LIM (IPR001781) - T[160-213] 6.5E-11 - T[220-272] 7.5E-15 - T[280-340] 5.4E-18
Pfam	Znf_LIM (IPR001781) - T[161-216] 1.0E-11 - T[221-277] 2.4E-9 - T[281-341] 5.8E-10

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRIP6_HUMAN	55.804 %	273	4.23E-88
LPP_HUMAN	57.466 %	277	2.54E-88
ZYX_HUMAN	50.233 %	227	1.14E-69