Aniseed - Transcript Card

Transcript 'KH2012:KH.C11.46.v1....' >
Transcript 'Boleac.CG.SB_v3.S15....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S15.g02979.01.t

Possible name(s)

SRSF12; SRSF2; SRSF8

Gene model

Boleac.CG.SB_v3.S15.g02979

Location

S15 [73,239 / 75,001]

Sequences

Amino acid sequence

Length: 202

>Boleac.CG.SB_v3.S15.g02979.01.p
MSYSSQSRGPPPIEGMYSLKVDNLTYRTSPETLRRQFDKFGEVGDIYIPRDRYTKESRGF
AFIRFYDKRDAEDAMDGMDGKMLDGRELRVQMARYGRPAEPQQRRHGGPRYGGGGGYGGG
GGYGGGGHGYRGGGGRYDRRSPRRRSYSRSRSRSRSRERRQRSYSRSRSRSHSKSKSPVD
GQNAKSRSRSKSRSVTPDDKNN

Nucleotide sequence

Length: 1,086

>Boleac.CG.SB_v3.S15.g02979.01.t
CAGCCGAAACTGGAAGACTTCGCCATTTGGATGCTCAGGGTTGCGTTGTTTCGGAAAATC
CATTTTTACTGCTAATTTTGTGACAATCTAGGCGCTNTCATGTCGTATTCGTCGCAATCA
CGAGGACCGCCGCCAATCGAAGGTATGTATTCACTCAAGGTGGATAATCTAACCTACAGG
ACTTCGCCGGAAACGTTGAGGAGGCAATTCGACAAATTTGGGGAGGTCGGAGACATATAC
ATTCCTCGAGACAGGTATACGAAGGAGAGTCGTGGGTTTGCATTTATTAGATTCTATGAC
AAACGTGATGCAGAGGATGCAATGGATGGTATGGACGGGAAGATGTTGGATGGTCGGGAA
CTTCGTGTACAAATGGCCAGATATGGAAGGCCGGCAGAACCACAACAGAGACGCCATGGT
GGACCTCGATATGGCGGCGGAGGTGGTTATGGTGGTGGAGGAGGTTACGGCGGTGGTGGG
CATGGGTACAGAGGCGGTGGCGGGCGTTATGACAGAAGGTCTCCAAGACGTAGGTCATAT
TCTCGCTCTAGGTCACGATCGAGGTCTCGTGAAAGGCGTCAAAGAAGCTACTCACGCAGC
CGGTCTAGGAGTCATTCGAAGTCCAAGTCTCCTGTAGATGGACAAAATGCTAAGAGCCGA
AGCCGATCCAAGTCAAGATCTGTGACGCCAGATGACAAGAACAATTGAAATTGTAAAGAA
TGCTTGTCCAATTACTGGCCTGCTTCAGTACCTGATTTTGAAACATTTCCTGCAGATAGC
GCTGGGCGGTTGCGGTGCCGAGTAGCAGTACAAGTATGCTGAGTAGCAGTTTGTCTTGTT
CCTGCGAGAGCTGTGTAGCTGGTGGCGCTGTGCTGTTATTATAAAATCGAGTAGGAGTAA
GCTGACTTNAAGGAGTCTGATGACAAGAGAAAAGATGCTGGTGCTTGGCATGCCTNTCGA
GATTGACTGATTGTCAATGTGATAATGAAGACACAGCGCTGGCGTCAACTTCTAGAACAC
TTTCTTTCATTGGTTGGAATATTGTTGCTGCTACTGTTTGCAATAAAGGAGAGGATAACA
TGTGTC

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-106] 2.9E-26
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[10-127] 5.51E-28
ProSiteProfiles	RRM_dom (IPR000504) - T[17-95] 19.246
SMART	RRM_dom (IPR000504) - T[18-91] 1.1E-23
Pfam	RRM_dom (IPR000504) - T[20-89] 4.1E-20

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SRSF2_HUMAN	79 %	162	2.02E-50
SRSF8_HUMAN	64.356 %	136	1.46E-39
SRS12_HUMAN	45.455 %	82.8	2.38E-19