Aniseed - Transcript Card

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S164.g03478.01.t

Possible name(s)

CNOT2; CNOT3

Gene model

Boleac.CG.SB_v3.S164.g03478

Location

S164 [60,484 / 68,554]

Sequences

Amino acid sequence

Length: 530

>Boleac.CG.SB_v3.S164.g03478.01.p
MFSSGFGNTPKKNMLFEDNMNDIGGLDAMRYLESAGIADVRGQPTSSQFSSALYGQQQKS
GNIGGIGQFARSLSIPVGNLTPSSLGGEIFNQQQNRALSQMSRNSMSIGPANVSSQLSNT
LISRQGMSPTRGVSPDMFSLKQAGVGTRAPGLTITRNQSFPSTQSLAMNAIGSESMSHLR
XQAQGRNGSSAMLDINEFPALKTVPQSGGITNGISNPFNLDQTEFPALAQRAPIGSQPTD
SFNSKQPYGLLNKQSGNNEFQIQNEDFPALPGAANAMNVMKAVFPEQDGRGDESSSKLGA
LGSLNSLGSLDGISSNQSSQQKGIQVLQDNSIKNIPRSMLMDQYGVVGLLAFIKAAESDP
TLVHLALGNDLTTLGLNLNSPDNLYHKFQSPFSKQPCRPQDVDFFVPSEYLTNAHVREKL
APIKLNRYGEDLLFYVYYTNPGDVLQLAAAAELYNRDWRYHKEERIWITRAPGVDPRMKS
STYEQGTYYYFDCQNWRKVAKEFLLEYEKLEERPHLPNLMSLHFNPAQHA

Nucleotide sequence

Length: 1,882

>Boleac.CG.SB_v3.S164.g03478.01.t
GCGGGTTTCCTCATAAAACTGCGTCGGCTGTGTTGGGAAGAAGTTTTTCTGTGGCAAAAT
TGATCGAGTCTTGTTGTTCTTTTCAGTCAGATGAGTGTGAGGTAGTGAAGGGTAATACTT
GTTGGGTGTTGTGTACATTATGTTTAGTTCTGGTTTCGGCAACACGCCGAAGAAAAACAT
GTTGTTTGAAGATAATATGAATGACATTGGCGGACTGGACGCTATGAGATACCTGGAATC
GGCCGGCATAGCAGACGTACGTGGACAGCCAACATCGTCACAATTCTCATCTGCGTTATA
TGGACAACAGCAAAAAAGTGGAAACATCGGTGGTATTGGCCAGTTTGCGAGAAGTTTGTC
AATACCTGTCGGTAATCTTACACCATCAAGCTTAGGGGGGGAAATCTTTAATCAACAGCA
GAACAGGGCTTTATCACAAATGTCTCGAAATTCAATGTCAATTGGGCCTGCGAACGTTTC
GTCGCAATTAAGTAACACGTTAATATCAAGGCAAGGCATGAGCCCAACGAGGGGAGTATC
TCCTGATATGTTCTCTCTCAAACAAGCGGGAGTCGGCACGAGGGCTCCTGGGTTAACGAT
AACAAGAAATCAATCTTTTCCATCAACTCAATCTCTTGCTATGAATGCAATTGGTAGTGA
GAGCATGTCGCATCTTCGACANCAAGCTCAAGGAAGAAATGGTTCATCAGCGATGTTGGA
TATTAATGAATTTCCAGCGTTAAAAACTGTTCCTCAATCTGGTGGGATTACAAACGGCAT
CTCTAATCCCTTCAATCTCGACCAAACTGAATTTCCTGCTCTTGCGCAGAGGGCTCCCAT
CGGTTCACAACCCACAGATTCCTTCAATTCAAAGCAACCGTATGGTTTGCTCAATAAACA
ATCTGGTAACAACGAGTTTCAAATTCAAAATGAAGATTTTCCTGCGTTACCTGGTGCTGC
CAACGCCATGAATGTGATGAAAGCAGTGTTTCCAGAACAGGATGGTCGGGGAGATGAATC
AAGTAGTAAATTGGGTGCTTTAGGAAGCCTCAATTCCCTCGGAAGTCTTGATGGAATCTC
TTCAAACCAATCATCACAACAAAAAGGCATTCAAGTATTGCAAGATAATTCAATAAAGAA
TATACCAAGAAGTATGTTGATGGACCAATATGGAGTCGTGGGTTTATTAGCTTTTATTAA
AGCTGCGGAAAGTGATCCAACACTCGTACACCTTGCACTCGGCAATGACTTGACAACACT
TGGACTAAATTTAAATTCACCNGATAACCTCTATCACAAATTCCAATCACCATTCTCGAA
GCAACCGTGTCGACCGCAAGACGTTGATTTTTTTGTTCCCAGTGAGTATCTGACAAATGC
TCACGTTCGGGAAAAGTTAGCTCCTATCAAGTTGAATCGTTATGGAGAAGACTTACTCTT
TTACGTGTACTATACGAACCCAGGNGACGTACTCCAACTTGCAGCTGCAGCTGAACTTTA
TAATCGGGATTGGAGATACCACAAAGAGGAGAGGATATGGATTACAAGGGCACCTGGCGT
CGATCCAAGAATGAAAAGCAGCACATACGAACAGGGAACATACTATTATTTTGACTGCCA
GAACTGGAGGAAAGTCGCTAAGGAATTTCTTCTTGAATATGAGAAGTTGGAGGAGCGGCC
TCACCTGCCCAACTTAATGTCCTTGCACTTCAATCCAGCTCAGCACGCGTGAATGAAATT
TCTTCTGTTTGTCTCTATATCTCTGTCCCTTTTTTGTCGTTACATGCCATTTTTTAAAAC
TTTTTTATGGACGAACAGTTTGAAATTCTTTCTGCTTCAAAAGCGGACAATGACAATAAA
ACACCTGCTGCTGGTCTCGAGG

InterProScan

Gene3D	CCR4-NOT_su2/3/5_N_sf (IPR038635) - T[334-530] 2.4E-79
Pfam	NOT (IPR007282) - T[387-510] 2.0E-30

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CNOT2_HUMAN	45.889 %	391	6.29E-131