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  1. Transcript 'Moocul.CG.ELv1_2.S12...' > 
  2. Transcript 'Boleac.CG.SB_v3.S165...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S165.g03504.01.t

Possible name(s)

NR1I2; NR1I3; VDR

Gene model

Boleac.CG.SB_v3.S165.g03504

Location

S165 [17,301 / 50,197]

Sequences

Amino acid sequence

Length: 595

>Boleac.CG.SB_v3.S165.g03504.01.p
MLHVLKMASCDLSSANGAPEAHSQVPRRSISNSPSSSVSAESTSGDVKEKSPQEKICVVC
GDVATGTHFAAMTCEGCKGFXRRSMKKKVEFTCAFENQCAINKSNRKHCQACRLQKCIDM
GMNSSLIMSDESVEKKRALIKMNRERKAALKLKKQQEEMEQREQKQEAPSEQVIKLSEED
KALIKMMLASHEQSYDFSYEGYEKFRGNDQIAAPDPQELALQNSTLAWFAAETKNSSPTP
QSKGRKTKTESLDSSENTLSSCSDVPSKEHSPFGGFNLPDLCSAGLGEFGDMFSTLHGTQ
KPSFLDNILHNAVAMPNPMPRINSDGSASSSSSSPYMSSNSAQGFDGFPAMFPPPLEDSN
GNMLSNCQDLPGIGMYNMDLLESLQGFQGMFNNGQAQEHRQHSLFQHFCDIMTWGIKKVI
EFCKCIPEFXELETVDQINLLRGGCLEMLVLRSYFAFASEGDKYKSDKFEYSPQNFKEAG
ASSEFIEQYMKVHERMRKMNLKVEEICLLLGLVLFSTDRPGIQDCAKVEAMQKRIAQALR
AYEYTNHDPDKACVIYSELLLLLPVLRTINVLFSNTIFTLKNQNEMDPLILEVNN

Nucleotide sequence

Length: 4,588

>Boleac.CG.SB_v3.S165.g03504.01.t
ATTACAGGCTTCAATACGGTAACCCGTTACAGCATTNATATTCGAGTCATATAGGGGCAA
CTGCAGCGTGCAGCCTCGGTGTTGTTTGCTTGTTTTTTTGCCACATTTCATGCTGATCTG
CTGGTCGTCTTATTTGGATGCTACATGTATTGAAGATGGCTAGCTGTGACTTGAGTAGCG
CTAATGGTGCACCAGAAGCTCATAGCCAAGTACCAAGACGGAGTATATCAAACTCACCAA
GCAGCAGTGTGTCCGCAGAATCAACATCTGGCGATGTCAAAGAGAAATCACCGCAGGAGA
AGATTTGCGTCGTATGCGGAGATGTTGCTACTGGTACCCACTTTGCTGCGATGACATGCG
AAGGATGCAAAGGATTTTTNCGGCGTTCGATGAAGAAAAAGGTGGAATTCACATGTGCTT
TTGAAAATCAATGCGCCATCAACAAATCCAACAGAAAGCATTGTCAAGCTTGTCGACTAC
AGAAATGTATTGATATGGGGATGAACTCCAGTTTGATTATGAGCGATGAGAGCGTGGAGA
AGAAGAGAGCGCTCATCAAAATGAACAGGGAGAGAAAGGCTGCGTTGAAATTGAAAAAGC
AACAAGAAGAAATGGAACAGAGGGAACAAAAACAAGAGGCACCGTCGGAGCAAGTGATAA
AGTTGTCCGAGGAAGATAAAGCGTTGATAAAAATGATGCTAGCCAGCCACGAACAAAGTT
ATGATTTTTCTTACGAAGGCTATGAAAAGTTCCGAGGAAACGATCAAATCGCCGCTCCCG
ATCCCCAGGAGCTCGCTCTACAAAACAGCACTCTTGCATGGTTCGCAGCCGAGACTAAAA
ACTCGTCGCCAACGCCGCAAAGTAAAGGACGAAAGACCAAGACAGAAAGTCTAGATAGCT
CTGAAAACACATTGTCATCGTGCAGTGACGTTCCGTCGAAAGAGCATTCTCCGTTTGGAG
GCTTCAACCTGCCAGATTTGTGCTCTGCAGGACTTGGAGAATTCGGCGATATGTTCAGCA
CTTTGCACGGAACTCAAAAACCAAGTTTTCTCGATAATATTCTTCACAACGCGGTAGCAA
TGCCAAATCCAATGCCAAGAATCAACTCGGATGGATCAGCGAGCTCGTCGTCATCGTCGC
CGTATATGTCATCGAATTCTGCACAGGGTTTCGACGGCTTCCCGGCAATGTTCCCGCCAC
CGCTGGAAGATTCTAATGGGAACATGCTGTCAAACTGCCAAGATCTTCCAGGAATTGGGA
TGTACAATATGGATTTGTTAGAGTCTCTTCAAGGATTTCAAGGAATGTTCAACAATGGTC
AGGCGCAAGAACACAGACAACACTCGCTTTTTCAACACTTCTGTGACATTATGACGTGGG
GTATCAAAAAGGTGATCGAATTTTGTAAGTGTATCCCGGAATTTAANGAACTGGAGACAG
TGGATCAGATTAATTTACTTCGGGGAGGATGTCTGGAAATGCTCGTTTTACGGTCATACT
TTGCTTTCGCCAGCGAGGGAGATAAGTATAAGTCGGATAAATTCGAGTATTCGCCTCAGA
ATTTTAAAGAAGCCGGCGCAAGCAGCGAATTTATCGAACAGTACATGAAAGTGCACGAAC
GGATGAGGAAAATGAACCTTAAGGTCGAGGAAATCTGTCTTCTTTTGGGTCTCGTTCTCT
TCTCGACTGACCGCCCAGGAATTCAAGATTGTGCCAAAGTCGAAGCCATGCAAAAGAGAA
TCGCTCAAGCGTTAAGAGCATACGAGTACACCAACCACGATCCGGATAAGGCTTGTGTGA
TCTACTCTGAGCTGTTGCTCCTACTGCCNGTATTGAGAACCATCAACGTTCTCTTTTCAA
ATACTATCTTCACTCTGAAAAACCAGAACGAAATGGACCCCTTGATATTAGAAGTCAACA
ATTGAAAGAAAACTGTAAACTTGCCTAGAGACTGCGTCAAGCAGAAGGCAAAAGAGAAAA
CACTCTGAGCGAAATAGAACGTCGNATCTCCTCAAAGTCAACAGAAGATATTTCATTCTA
TGAACATTTGCATTAGGTGCATTCTTTTGTTGATTAGCTATTACTACTTCATATTGATAG
CGTTTTGTAAATCGTGCGGTTCAATTCTGGACAATACCNCGTTCAGATGCTAATGATTTC
TGTTTTTCTCCTTCATTTCAAACCCGACCGGCTGTCGAATCATAGCTGCTCAAGTGTTGA
TAGTTAAAAGCTGCCGGTTTCATGGTTTCGTGCGGTGCCTGTGTGATTTGATTGGCCAAA
ATCTCTTCAGACTATTTCAAGGTGTATATAATGAATTTTTGGGTCGTTGTTTTAATGTCG
GTTTTCTTTAACATTTTTGGTCTCTCGATTGACCAAGAGTACTTTGGTCGTTAGCAAAAC
TAGATCAATCTCGATTATTTACGTTAATCGGTATTTTTGATCAGGATTCAACTATTGGAT
CGATTCACATTTCAGATTCCAACTCTTGGACGCAGTTTTTGACTTCTTTAAATCATACGT
TCTTTATATGGAACGCTGGGTAGTTGGTTTTATGCAACTCGTGTGTTAAATAATCCTTGC
TTTGGGCAAAATGCACGGATGTGGATTGAATCAAACCCTGGGTTTTTGTTTCGAGTTAAC
ACGTGGAAGATATCTAAGAAACAGCTCTTTTGCTGCTTTCCGATTTGGGTCTAAAATTTT
GTGTTTAATCATGGATTATCGTAAACGCGGTTCATATCGTTTCATTGAAAATTTTGTCTG
CAATGATTAGTCTGCGGTAATTTATAATCGACATCCGTTCAACTCACCATCCTTATTGAA
TTTAGGGCTTTGATCAAATCCATTCGCCGTTGCAAGTCATGAAAATGCCGAGATGGCTCT
TGAGGGGCATTTTAACAACAGATTTACCAATGACTTTACACACAGGTTTTACCTATTGAG
AAATTCAGTCTAGTAACAACCGTCCTACTCAGTTCATCCTTGATATCTGTATGGTTNTAA
TTTCTTTGTTACGCAATGACTTGTCACTTGCCATGCAATTTCGGCCGAGCCTTCAGATTA
AGAATAAAGTTAATCGTGGATTAGTGATTGAGAATAAAGTGGGGAAATTGTGATCAATTT
TGTGTTACTCAAAATTTCAGAAATCAACGATTAACTTGAATCCTCGTCTGTTTACTCAAC
CATTTGTTTTGGCAAATTGTATCCACACTGCTAGCACCATTCCATTATTGTTGGAATATC
CAATCCATGAAAATTCATTGTTGTCATTATGACAGTATTTACTCACAGTTCCTTCCATGT
AGTTTCAAGCCTCCCGCCACGGCCCCCAGTTCTTTGCGGTTCTTAGAAATCCTATGAAAG
TTCTTGATAAACGTTCCATTGATGGCCTTTACCGTATCTATAAAGTTCAGCGGTTTTTGC
ACTTACAATCAAGTTTCATTGTCCCGTATCCGATAAAGTTCGTGNTGTCTGAGTTTTTGT
GGGGAGAAAAATCATTACTTTCTTTTCTTGCTCTTTGTAATGCAANCGTAGTGTTTCTGT
AATGGTGACTTTTGCTTATGTCTCTGTTTTCACTTTCANCTCAGTTCGGTTAACTTAACG
TGGCCTGTTTCTTTAGCACAACCAATTNAGTGACCATAGTGTATTCGAGGAAAGGCAGAA
ATTGCGATATTGCGATTTCTTTCCACTGTCCNAAATCTAATGCCCGCTTTTTCGTTTCAA
AAAATATGGTCGCGTTACTACCGAGGCACCTTGATGTTTNTTANTTAAATGCATTTTCGG
GGACTCGTGTGTGTGCAACTGCCCGTGCGCGGTGATGATATCGATTCAANAGAATAATAT
CATCTGCCCTACTGAAAAANTGCCTGTCCGATATTTTCCAATTATGCCCAAACGCAAATC
GATTGCTATGATATCTTTACTCTGGTACTCTGTTCATTTCGGACCTGCATTTTAGGTGAT
ATGATTTAGCACATGCGCTCTCTAGTTGATCTTGGTTGTTTCTTACTAGTGGGAAAGTAC
CCTGTTTTATATGGTTGGATGAATTTAGCATNTACATTTACCTACTAGACTAACATGGTC
AGGTTCGATGTGATGATTAGCAATAAATTACGAATCGATGACGTGCTCGATTTAAATATT
TATTATCACATTTCTGTCCTGATTTCAACCCGACGTTTTGAAAGTAAACGGTACATTCAT
TGACAGGCTGTAGTCACTTGTCACGCAACCTGTAGTGAAAATGGTTTCATGTTTTTGAAA
CGGTGTGTTTGAAAACGTTTTCCCTTTGTTTCGCCACCATCTTAAAAAGTGACATCATCA
TCACTTTGAATTCGTAATTTATCTCATTCTTTTTTTTGATAATGACTGTTCTGAAGTTCA
TCAAGTTTCCTTNTGAGTTCTTTTTATCGCAGCTGCGTTTCATGTTTTGTACATTTGTCG
GTGTGTTCTTCGCTTGTCTGTGTCATTATGTACAGTAAGCTAAAGCTGTTCGAGATAAGT
TATTTTGTTGACGTGTTTCGAGAAAACCAGAGTCGTCCTGTATCAGTCCTATCATCACGC
CTTGATCAGTGGTGGTTCTAGAACGGAC

InterProScan

Gene3D
Znf_NHR/GATA (IPR013088) - T[46-175] 1.9E-29
SMART
Znf_hrmn_rcpt (IPR001628) - T[54-125] 4.0E-30
ProSiteProfiles
Znf_hrmn_rcpt (IPR001628) - T[54-129] 18.345
Pfam
Znf_hrmn_rcpt (IPR001628) - T[56-123] 4.0E-27
PRINTS
Znf_hrmn_rcpt (IPR001628) - T[57-73] 1.3E-14 - T[73-88] 1.3E-14 - T[106-114] 1.3E-14 - T[114-122] 1.3E-14
PRINTS
Nuclear_hrmn_rcpt (IPR001723) - T[118-128] 4.5E-15 - T[411-432] 4.5E-15 - T[432-448] 4.5E-15 - T[499-514] 4.5E-15 - T[558-575] 4.5E-15
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[389-593] 2.36E-51
Pfam
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[401-579] 1.2E-23
SMART
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[410-570] 2.0E-35

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VDR_HUMAN 45.614 % 150 7.19E-40
NR1I3_HUMAN 39.333 % 123 7.54E-31
NR1I2_HUMAN 39.521 % 125 3.27E-31





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