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  1. Clone 'ciad066b18' > 
  2. Transcript 'Moocul.CG.ELv1_2.S26...' > 
  3. Transcript 'KH2012:KH.C9.73.v4.A...' > 
  4. Transcript 'Harore.CG.MTP2014.S1...' > 
  5. Transcript 'Boleac.CG.SB_v3.S16....'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S16.g03346.01.t

Possible name(s)

SCN1A; SCN2A; SCN3A

Gene model

Boleac.CG.SB_v3.S16.g03346

Location

S16 [301,448 / 317,355]

Sequences

Amino acid sequence

Length: 2,019

>Boleac.CG.SB_v3.S16.g03346.01.p
MSCAALPCVNAILLQRDHLRKANRSERERHASERSSTKLGADDAVYHKPNIDLEQGKTLP
EYLHSDIPDEYLCRPLIDIDPYYVSKNTYVILDRNKVIYRFTRDSAFYCISPLNPVRKVM
NRIYIHSYPFQSRTEITNQVNWVAWGDKERRDSNGDLFSWINGGNDVTTSFNILQGLFYS
ESSSLMHFTIFNLFIMLTILVNCVFMTFGKNISWVDNYVERIFLAIYTFEAVVKIFSRGF
ILSPFTYMRDPWNLLDISVIVSAYLDIALKASSQSSDSSIPGMAALRAFRVLRALKAISV
VPGLKALVSALIESVKQLKDVMILTFFCLSVFALIGLQLFKGALRNKCVKKWPPAYDDSL
KSMWLSNDYANYSREYAKNFSDSGILSNFTGLTVSQPMECELNPTPNCSDKVWFNESYES
WIQDECNYCFVRGSPWLCGNGSNIGRCWHGYECQQTGENPNYGYTSFDTFYWAFLSLFRL
MAQDYWENLYQMLVADEEDRKRELLRARRDEIDTLLMEVEDAEKKLVDKKCISKCGQAMT
MSQHTINGSPQHKPRDETDSKNQVFIPEIAVTPCQDLLPQVVVESPSEHNDKSPPVDGDV
FFMDSLNPMHSRSRLQSLDALNEPQLALLKKRALSQASIMTADLLPQVVVESPSEHNDKS
PPVDGDVFFMDSLNPMHSRSRLQSLDALNEPQLALLKKRALSQASIMTAGYEGLWFKSSA
FLSIFLRYNYLIRTKYYRGFTEWISKKKHVVLIGTLVQQNSVFGIVAERGAQSTESSLRP
ESKKMPFIFQCKVICEDPFLDLFITICILLNTLFLAADHRPIEPSVAATLNNANTTYACF
PKVFTIIFTMEMIVKVIGMHPYNYFQQAWNVFDSIIVTHALAVLSTSDIPLGKDDVSSCG
CVVKKWHSREFLRVAAVWRWIQELLGRRGLVDVISDNADRFPVYPPYRMRVFKLAKSWPT
LNMLIKIIGDSLGSLGNLTFILLIILFIFAVVGMQLFGDKYTEAQLSEPEPMRWHMKDFX
HSFLIVFRILCGEWIETMWDCMRWGGEMSAVCIPVFLLVYIVGNLVVLNLFLALLLSSFS
ADTFSKDSKDEEEELNAIQLSMIRINKFMSFIRRKMVNLKNMLLESCRRKIVSGLDTKLI
NEKRPNSEAGKGDASGNGISFGANVSARRRPEMSKKGCEATEVVHVTWSPQNVKVPRASG
ESDVEMSESDDLGAIAELKSIQSSLSDLRSWGSLSGTVQAVDGKTSESVDDNDDIPEPCW
PGTCSARCACCDPSTDEGCCLVWWNMRKICYRIVEHEWFETFIILMILLSSAALAFEDIY
YVDNRGLKRILKYMDRIFTYVFIFEMLLKWVGYGFKRYFTNAWCWLDFLIVGVSIIGLVS
ESMGMDNISSLKSLRTFRALRPLRAMSRFEGMKVVVNALVGAIPSIFNVLMVCLIFWLIF
SIMGVNLFAGKFRKCMNITSGXKLKANYSIANYTFENLTEENCTFINQHIDAEIMWVKSK
ISFDNSLKGYLALLQVATYKGWMDIMYDAVDITDDGLQPVFENNKLFYLYFVVFIVFGSF
FTLNLFIGVIIDNFSQQKKKLGGQDIFMTEEQRKYYNAMKKLGSKQPQKPVPRPKNAFQG
WVFDIVTHQSFEITIMTLIIANMFTMMVEHHNIEHRLXEILQYINYVFIAIFTGECVMKL
FALRHYYFKXAWNVFDFVVVIISIIGTAMDEVIQKYLVQPTLFRIXRLARIGRILRLIRG
AKGIRTLLFALMMSLPALFNIALLLILVIPIMDTEPPYCDPNLGNNSRYPAPNGDCGSAN
IGIPFFVTYLIFTFVIVVNMYIAIILENFGVATEESSDPLGEDDFEMFYEVWERFDPKAT
QFIRYEYLSDFVDSLDDPLKVAKPNKFTLMDMDLPMVMGDRLHCLDVLFALTKRVLGESE
ELEGLRSQMEEKFMDSNPSKQSYEPITTTLRRKQEELSAVILQRAWRRYRIRSSVQKASX
MFLTKDLTNEELKLESNAENQAQDLPNPTETEPTSVQRI

Nucleotide sequence

Length: 6,060

>Boleac.CG.SB_v3.S16.g03346.01.t
ATGTCGTGCGCTGCGCTGCCGTGTGTCAATGCAATCTTGCTTCAACGCGATCATTTACGA
AAGGCCAACCGTTCGGAGCGTGAAAGGCATGCATCGGAACGCTCAAGTACCAAACTGGGA
GCGGATGATGCGGTTTATCACAAGCCAAATATTGATCTGGAACAGGGAAAGACGCTTCCT
GAATACCTCCACAGTGACATCCCAGACGAATATCTATGTCGCCCTCTTATCGACATAGAT
CCTTACTACGTGTCTAAAAATACGTACGTCATTTTGGATCGGAACAAAGTAATTTATCGC
TTCACGCGAGACAGTGCGTTCTACTGCATCAGTCCTTTGAATCCCGTACGAAAAGTTATG
AACAGAATTTACATCCATTCATATCCTTTTCAAAGTCGTACCGAAATAACCAATCAGGTG
AACTGGGTTGCATGGGGTGACAAGGAAAGACGTGATAGCAATGGGGATTTATTTAGTTGG
ATAAATGGAGGAAATGACGTAACTACATCGTTCAACATCCTTCAAGGGCTATTTTACTCA
GAATCTTCCTCCTTAATGCATTTTACAATATTCAATCTTTTCATCATGTTGACTATTCTC
GTCAATTGTGTCTTCATGACTTTCGGAAAGAATATATCTTGGGTAGACAACTATGTTGAG
AGAATATTTCTGGCAATCTACACGTTCGAAGCGGTGGTTAAAATTTTTTCCAGGGGTTTT
ATCCTATCCCCGTTCACCTACATGCGAGATCCGTGGAATCTTTTAGATATCAGTGTTATT
GTATCAGCGTACCTAGACATCGCTCTGAAGGCATCATCTCAATCATCCGATTCGTCCATC
CCCGGTATGGCTGCATTGCGTGCGTTCAGAGTATTGAGAGCGCTGAAAGCTATTTCAGTT
GTGCCAGGTTTAAAGGCTCTAGTATCCGCGTTGATAGAATCGGTGAAGCAACTCAAGGAT
GTTATGATTCTCACATTTTTCTGTCTTTCCGTCTTTGCACTTATTGGACTCCAGCTTTTC
AAGGGCGCCCTTCGAAACAAGTGTGTAAAAAAATGGCCACCTGCTTACGACGATTCTCTT
AAAAGCATGTGGCTGAGCAATGATTATGCAAACTACAGCAGAGAATACGCTAAGAATTTT
TCAGACTCTGGAATTTTATCAAACTTCACCGGTCTCACTGTGTCGCAACCAATGGAATGT
GAATTAAACCCGACACCAAATTGTTCTGATAAGGTGTGGTTCAATGAAAGCTACGAGAGC
TGGATTCAGGACGAATGCAACTATTGCTTCGTACGTGGCTCTCCATGGCTGTGCGGCAAC
GGATCCAATATAGGGCGTTGCTGGCATGGATACGAATGCCAACAGACCGGAGAAAATCCA
AATTATGGCTACACCAGTTTTGATACATTCTATTGGGCTTTTCTGTCACTGTTCAGACTC
ATGGCCCAAGACTATTGGGAAAATTTATATCAAATGCTCGTAGCAGATGAAGAGGATCGG
AAGAGAGAATTGCTCCGTGCAAGACGAGACGAAATTGACACGTTGTTGATGGAGGTTGAA
GACGCGGAAAAAAAGTTGGTGGATAAAAAGTGCATATCAAAATGTGGACAAGCTATGACT
ATGTCTCAGCATACAATCAATGGCAGTCCACAGCATAAACCACGGGATGAAACCGATAGT
AAAAACCAGGTGTTTATACCAGAGATCGCGGTAACTCCTTGTCAAGATCTGTTACCTCAA
GTTGTCGTGGAGTCACCTAGCGAACATAACGATAAGTCTCCGCCGGTAGACGGCGATGTA
TTCTTCATGGATAGTCTGAATCCTATGCACTCAAGATCTCGATTGCAATCGTTGGATGCG
CTGAATGAACCACAACTTGCTTTGCTGAAGAAGCGAGCGTTGAGTCAAGCTTCTATAATG
ACTGCTGATCTGTTACCTCAAGTTGTCGTGGAGTCACCTAGCGAACATAACGATAAGTCT
CCGCCGGTAGACGGCGATGTATTCTTCATGGATAGTCTGAATCCTATGCACTCAAGATCT
CGATTGCAATCGTTGGATGCGCTGAATGAACCACAACTTGCTTTGCTGAAGAAGCGAGCG
TTGAGTCAAGCTTCTATAATGACTGCTGGTTATGAAGGCTTATGGTTTAAGTCTTCAGCG
TTTCTAAGCATTTTTCTGCGATATAATTATTTGATTAGAACCAAATACTATCGCGGCTTT
ACCGAATGGATAAGCAAGAAAAAGCATGTTGTTCTTATTGGTACTCTTGTACAACAAAAC
TCTGTATTTGGGATTGTTGCGGAGCGTGGCGCTCAATCCACCGAGTCTAGCTTGAGACCT
GAGAGTAAGAAAATGCCTTTTATTTTTCAGTGCAAAGTCATTTGTGAGGATCCATTCTTG
GACTTGTTCATTACCATTTGCATTTTACTCAACACCCTATTTCTGGCTGCTGATCATCGT
CCTATAGAGCCGTCCGTCGCTGCTACACTAAACAATGCTAACACAACCTATGCGTGTTTT
CCAAAGGTATTTACGATAATATTCACCATGGAGATGATCGTGAAAGTGATCGGCATGCAC
CCGTACAATTATTTCCAACAAGCGTGGAATGTGTTTGACTCAATCATCGTCACACACGCC
CTTGCCGTTCTCAGTACTTCGGACATTCCGCTTGGTAAGGATGACGTTTCATCGTGTGGT
TGTGTCGTTAAAAAGTGGCATAGTCGGGAATTTCTGAGGGTCGCAGCTGTTTGGAGGTGG
ATACAAGAATTACTTGGGAGGAGAGGGCTGGTTGACGTCATTTCAGACAACGCAGACCGA
TTTCCAGTCTATCCGCCGTACCGAATGAGAGTTTTCAAATTAGCAAAATCGTGGCCGACA
TTGAACATGCTCATCAAGATCATTGGCGATTCTCTCGGCTCTTTGGGAAATTTGACTTTT
ATCCTCCTTATCATACTGTTCATATTTGCAGTGGTAGGAATGCAACTTTTCGGCGATAAA
TACACAGAAGCTCAACTCAGTGAGCCAGAACCGATGCGGTGGCATATGAAAGACTTTTTN
CATTCATTTTTAATCGTATTTCGAATATTGTGCGGCGAATGGATAGAAACGATGTGGGAT
TGTATGAGATGGGGCGGGGAAATGTCAGCTGTGTGCATTCCTGTATTTTTACTGGTCTAC
ATCGTGGGAAATCTTGTGGTATTGAACCTGTTCCTGGCGCTGCTGTTGAGCTCCTTCAGC
GCTGACACATTTTCGAAAGACTCAAAAGACGAAGAAGAAGAACTCAATGCCATCCAACTT
TCGATGATACGAATAAACAAATTCATGAGTTTCATACGCAGAAAAATGGTTAATCTAAAG
AATATGTTACTTGAATCATGCAGGAGAAAAATTGTCTCTGGGCTCGACACAAAACTTATA
AATGAAAAACGTCCCAATAGTGAAGCGGGTAAGGGTGATGCGTCAGGCAATGGAATTTCA
TTTGGAGCGAACGTGTCCGCCAGGAGGAGACCAGAAATGAGTAAAAAAGGATGTGAAGCC
ACTGAAGTGGTTCATGTGACCTGGTCACCGCAAAACGTGAAAGTGCCACGGGCTAGCGGA
GAATCCGACGTTGAAATGTCCGAGAGTGATGACCTTGGAGCAATAGCTGAATTGAAGAGC
ATTCAAAGCTCTCTAAGTGATCTTAGAAGTTGGGGATCGCTCTCTGGAACCGTGCAAGCA
GTCGACGGTAAAACATCAGAATCAGTTGACGATAATGATGATATACCTGAACCTTGTTGG
CCTGGGACATGCAGCGCGAGATGTGCTTGCTGTGATCCAAGTACGGATGAGGGTTGTTGC
TTGGTGTGGTGGAATATGAGGAAAATTTGCTACAGAATAGTCGAACATGAATGGTTCGAA
ACTTTCATCATTTTGATGATTTTGTTAAGCAGCGCAGCGTTGGCTTTTGAAGATATATAT
TATGTGGACAATCGAGGACTCAAAAGAATACTGAAGTACATGGATAGAATCTTCACCTAT
GTTTTCATATTTGAAATGCTTTTAAAGTGGGTCGGATATGGCTTCAAGAGATATTTCACC
AATGCCTGGTGTTGGTTGGATTTCTTAATAGTAGGGGTTTCCATCATTGGCCTAGTGTCC
GAATCAATGGGGATGGATAACATTAGCAGTCTCAAATCTTTGCGGACTTTCCGAGCTCTA
CGGCCCCTGCGCGCCATGTCTAGATTTGAAGGAATGAAGGTTGTTGTGAACGCACTGGTT
GGAGCTATCCCGTCGATATTCAATGTTTTGATGGTTTGTTTGATATTTTGGCTCATATTT
TCTATCATGGGAGTGAATCTTTTTGCTGGAAAATTTCGAAAGTGCATGAATATCACATCG
GGGNAAAAATTGAAAGCAAATTATTCGATCGCAAACTACACGTTCGAAAATTTAACTGAA
GAAAACTGTACCTTTATCAACCAACATATCGACGCCGAGATAATGTGGGTTAAATCGAAA
ATTTCCTTCGATAATTCGCTGAAAGGATATTTAGCTCTTCTTCAGGTTGCCACCTACAAA
GGCTGGATGGACATCATGTATGACGCTGTTGACATCACAGACGATGGNTTGCAACCTGTT
TTTGAAAACAATAAACTATTCTACCTGTATTTTGTCGTGTTTATCGTATTTGGAAGCTTT
TTCACTTTGAACTTGTTTATCGGTGTCATCATCGACAACTTCAGTCAACAGAAGAAGAAA
CTTGGTGGGCAAGATATATTTATGACAGAAGAACAAAGGAAATATTACAACGCAATGAAA
AAGCTCGGATCAAAGCAACCTCAAAAGCCTGTTCCGCGACCGAAGAACGCTTTTCAAGGA
TGGGTTTTTGATATCGTGACACATCAATCGTTCGAAATTACCATTATGACATTGATTATT
GCGAATATGTTTACAATGATGGTAGAGCATCATAACATAGAACATCGACTGGANGAGATA
TTGCAATATATCAATTATGTGTTTATTGCTATATTCACTGGTGAATGTGTGATGAAGTTG
TTTGCATTACGCCATTACTATTTCAAAAANGCGTGGAACGTTTTTGACTTCGTTGTTGTT
ATTATATCCATCATTGGAACTGCCATGGACGAAGTTATTCAAAAGTATCTGGTGCAGCCC
ACTTTGTTTCGGATCATNCGTCTGGCAAGAATCGGGAGAATATTGAGACTGATTCGCGGC
GCCAAAGGCATACGAACTTTGCTCTTTGCNCTCATGATGTCTCTACCTGCTTTGTTCAAC
ATCGCACTGCTTCTAATCCTGGTTATTCCTATCATGGATACTGAGCCACCCTACTGTGAT
CCAAATTTGGGGAACAACAGTCGTTATCCTGCACCTAACGGAGATTGTGGAAGTGCTAAT
ATTGGAATTCCGTTTTTCGTTACTTATTTGATATTCACGTTCGTTATTGTCGTGAATATG
TACATCGCCATTATTTTGGAAAACTTTGGAGTTGCTACAGAAGAGAGTTCCGACCCATTA
GGAGAGGATGATTTTGAGATGTTCTATGAAGTTTGGGAGAGATTTGATCCGAAAGCAACG
CAATTTATTCGATATGAATATTTGTCGGACTTTGTTGACAGCTTAGATGATCCATTGAAA
GTTGCTAAACCAAATAAATTCACTCTCATGGACATGGACCTTCCCATGGTCATGGGTGAC
AGGTTGCATTGTCTAGATGTGTTGTTCGCTTTGACAAAACGTGTTTTAGGAGAGTCTGAA
GAGTTAGAAGGTTTAAGATCACAAATGGAAGAAAAATTCATGGATTCCAATCCATCTAAG
CAGTCGTATGAGCCGATAACTACAACTCTAAGACGGAAGCAAGAAGAATTATCGGCTGTC
ATCCTTCAACGAGCTTGGAGAAGATATCGCATTCGTAGCAGTGTTCAGAAAGCTTCAANA
ATGTTTTTGACTAAAGATCTAACGAACGAAGAACTCAAGTTAGAAAGCAATGCGGAAAAT
CAAGCTCAAGATTTACCTAATCCTACAGAAACTGAACCTACATCAGTCCAACGCATCTAA

InterProScan

Gene3D
Volt_channel_dom_sf (IPR027359) - T[180-302] 2.0E-21 - T[788-923] 9.3E-21 - T[1287-1409] 1.1E-29 - T[1621-1741] 1.0E-38
Pfam
Ion_trans_dom (IPR005821) - T[189-492] 4.4E-62 - T[798-1080] 3.3E-42 - T[1296-1580] 1.4E-62 - T[1628-1769] 2.9E-30
Pfam
Na_trans_assoc (IPR010526) - T[1094-1292] 1.1E-18
PRINTS
Na_channel_asu (IPR001696) - T[1808-1827] 1.9E-11 - T[1843-1856] 1.9E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SCN1A_HUMAN 46.919 % 1193 0
SCN2A_HUMAN 50.726 % 1209 0
SCN3A_HUMAN 51.905 % 1187 0