- Transcript 'KH2012:KH.C4.370.v3....' >
- Transcript 'KH2012:KH.C7.86.v1.B...' >
- Transcript 'KH2012:KH.L141.53.v1...' >
- Transcript 'Cisavi.CG.ENS81.R7.2...' >
- Transcript 'Boleac.CG.SB_v3.S18....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S18.g03954.01.t
Possible name(s)
DDX6; EIF4A1; EIF4A3
Gene model
Location
S18 [214,947 / 221,829]
Amino acid sequence
Length: 466
>Boleac.CG.SB_v3.S18.g03954.01.p
MANVMPPTNVSNQGPKYTNGPARRTSANGNSKQQNSRPANNPQPESGKVGEGQDWKANLF
LPPKDRRKKTTDVTATKGNEFEDFCLKRELLMGIFEKGWEQPSPIQEESIPIALSGRDIL
ARAKNGTGKSGAYLIPMLEKCDQSKDYIQAVVLVPTRELALQTSQIAIELSRHMGSLNVM
ATTGGTNLRDDILRLESNVHVIIATPGRILDLMGKRIAKVDKCNMFILDEADKLLSQDFK
RMINDIVSFLPQNRQILLFSATFPCSVKEFMENLMKKPYEINLMDELTLKGVTQYYAFLE
EKNKVHCLNTLFSKLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQDYRNRVF
HDFRQGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMSETYLHRIGRSGRYGHLGLAINL
ITYADRFNLKAIEEELHTDIKPIPPVIDKSLYVAEFSQEENDEKKS
Nucleotide sequence
Length: 3,577
>Boleac.CG.SB_v3.S18.g03954.01.t
TGATTTCAGAATTATTATCATCGTGTAATAGTCATATGATATAAGAACGCATTGATTTGT
GTTTGTGGTGGAGGACTCTGTAGACTGCATTGTGCCTTGAAAGCAGTGTTGACAAATCAG
GAGTGATATCTCAAGACTGTCTTATTTACGTTATTCAAGGATCAATCCTCTGAGAACAAA
CCGTATTAAAGTACAGAAGGATTATATACTGTATATCAAAGGCAAAGCCAGACTTCAAAA
ATAATTGCATTGACAAAGACTGAAATAATTGNAAAATGGCTAACGTCATGCCTCCGACAA
ATGTTTCAAATCAAGGTCCTAAATATACAAACGGTCCCGCACGACGAACTTCAGCGAATG
GAAATTCAAAGCAGCAGAACAGCAGGCCTGCAAACAATCCTCAACCGGAATCGGGGAAAG
TAGGTGAAGGGCAAGACTGGAAAGCAAATTTATTTCTCCCACCAAAAGACAGAAGAAAAA
AGACGACAGACGTAACAGCGACAAAAGGAAATGAATTTGAAGACTTCTGTTTAAAACGCG
AGCTCTTGATGGGAATATTCGAAAAAGGGTGGGAGCAACCTTCACCGATTCAAGAAGAAA
GCATACCCATTGCACTATCAGGTCGAGATATTTTAGCAAGAGCTAAAAATGGAACGGGAA
AGTCGGGTGCGTACCTTATACCGATGCTTGAAAAATGTGACCAAAGTAAAGATTATATTC
AAGCCGTTGTTCTTGTGCCGACGCGAGAATTGGCTCTTCAAACCTCACAAATTGCGATTG
AACTAAGCAGACATATGGGAAGCCTAAACGTAATGGCTACGACGGGAGGCACCAACCTCC
GAGACGATATTCTCAGACTGGAGAGCAATGTCCATGTCATCATAGCCACTCCAGGCCGAA
TACTAGACCTAATGGGAAAAAGAATAGCCAAGGTCGACAAATGCAATATGTTCATTCTAG
ATGAGGCAGACAAATTGTTGTCGCAAGACTTCAAAAGAATGATCAACGACATCGTTTCTT
TCCTGCCGCAGAACCGACAGATCCTTTTGTTTTCTGCTACATTCCCGTGCTCTGTAAAGG
AATTCATGGAAAATCTCATGAAAAAGCCGTATGAAATCAATTTAATGGATGAGTTGACAT
TAAAAGGTGTAACTCAGTATTATGCCTTTCTTGAAGAAAAGAATAAAGTTCATTGCCTCA
ACACTTTGTTCTCGAAGCTGCAAATCAATCAATCTATTATATTTTGCAACTCAACTCACC
GAGTGGAATTACTCGCCAAGAAGATTACAGAACTTGGCTACTCGTGCTTTTACATACATG
CCAGAATGAAGCAAGATTACAGGAACCGTGTGTTTCATGATTTCCGCCAAGGACTCTGCA
GAAACTTGGTGTGCAGTGATCTTTTCACGAGGGGGATTGATATTCAAGCTGTCAATGTCG
TCATTAACTTTGACTTCCCTAAGATGTCAGAAACTTATCTTCATCGTATTGGAAGATCAG
GACGTTATGGCCATCTTGGTTTGGCTATAAATCTCATCACCTATGCTGATAGATTCAACT
TGAAAGCAATAGAAGAAGAATTGCACACGGATATCAAGCCTATTCCTCCTGTAATTGACA
AATCATTGTACGTTGCTGAATTTTCTCAAGAGGAAAATGATGAAAAGAAATCTTGAATGA
TCGTTACGTAAAGGATGCGATTATTGGTTCCAGTTTCTGCCAAAATTCCATTTGAAAAGG
TGTGCCGTCTTGTCAACGGGATTACTTCATCTGGAATATTTAGCGTTTCCCATTTTCTTC
CTTCACATTGAAATTGTTTTTTGCTTTCTTGTTTATTTTGAATTTGATATTATCGTTTGG
TCCTTTGTCATAGTTTCCATGGAAAACGAGATGTGGAATTTATGTCACTGTGGTCCACGA
ATTATTAACATTTCATGAGGGACCCATCAACTCGATTTGAGAGTATATATGTGGAAATTA
CGACCATCTGACCCTAATGTTTTCTAATCTTGCTGATTCAATGGATGACTTGTTTTGGGT
ATTATCGGGTGGGTGCTGTNCTTGGTCCTGACTTGATATAGACTTGCGATTGCAAAAGCA
TCACTGAGAAATGATGCCCTCTAGTGTTGCTTTTGCAGTCATAACATGAACGATCCTTAT
GAGTTGGTGGTGCTTTGTCATATATTATCGTTTTCTGATTTATTATTGCTTTCCATTTCC
TGATGAACGTCACGGCTGAGCGACGTTTCTTATCACCTCAAGCATAATAAGATACTGATG
TGTCTAGAAGAGTCATCCATAAAGGCTTGAGCAATGCGAACGTTGATGTGATGGTAACCT
GGTCCGAATCTTTTTACAGTAAAGCATGAAACATGCTATGTTGGACAAACTATATGACTA
ATTGCAGAATGTCGTATTTGAAGCTCGAAAAATTACATGTGTGGACAAGCAAAGGAATGG
ATATATACATAGTAAAAATCCTGACTAAAGGCATGGACGCTGTCCGAACTATATGCAATG
TCGCATTACAATTCCTGTCTGTAAAAAACCATGAGCAGCTTTTTCAGTAGTCCCTACCGT
GATTATTCCTTATGGGAACAGTGCTACGTCTGCACCAACTTCCATTTACGAGCTTGTAGT
AAGCTCCATAAATAATTTNCTCCGCTGTGGTCCGCCCTGTGCCTTCATAGCAGGTTATTT
GAAGGAATGACGGGNAAATATGGAGTTTTAATTTATGATGTCTCTATATTTTTTTATGCT
CTAAATGCAAAATGTGCTGTTGCCCGATTGTTCAATTTAGCTTACAAGGATATTATGTGT
GAGCTTATGAATGATCATTGGCATGATCTTGCACTGTGCAAGTGTAATATCCTGTCAGGA
AAGTAATAGGGCATCATTACTTTCAGTTTGACAGGATATTCTTGTTAGGTTTGTATAATG
CCTAGAGGCTTGCAGTATCAAATGATTGGTACTTGTTTGTTCCACCTTAGCCGTTTGTCA
ACATCATGTTTGAATGGTTACTGATTTATACGAATGTTTATGGGGATGCATTTGTATAGC
TCTATGTAATCTACGTCTCCTGGATGGATACATCTAGAAATGTATGGAGACAATGTGACT
ATGGTCTCTGGTTGTGAAATATCACACTTTTCTACCATGGGGATAATAGCCACCTACACT
TTACCATGTTCCAGAACCTGGTACAATTAGAAAGAAAACGCCAGAACTTATTTTCGACCG
GGTCCTGGAACTAGTCCCCGTGCATGATCAGACTTGCAATAGCTTGGGAAGAGCATGATT
CTATCCACAAACGCCGGCTACTTTATTAATTGGTTTTGATCCTTCCTACTTCATGAGATG
TGCTTAAATTCTAACTGCTTTGGTCGAGTTTTGAAGCCTTGTTCCCAAGTTATGTTTATC
ATGCATATGAACCGGTCTTGACTGAAACCAATTCGCGAGATGTTCTATGCCCTGTATGTT
AAATTTCACTTGCAAGCAGCTATTTGTATCCTCCTACAAACCACCTGAGTGGGATGAAAT
TGACTGCCCTCTATGTGAAATAAATGATGCAGAGAAG
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[79-107] 9.649 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[98-295] 3.1E-55 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[104-269] 2.7E-41 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[110-281] 28.661 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[148-434] 3.16E-65 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[227-235] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[291-451] 23.077 |
| CDD |
Helicase_C (IPR001650) - T[292-420] 1.61818E-37 |
| Pfam |
Helicase_C (IPR001650) - T[305-412] 1.1E-26 |
| SMART |
Helicase_C (IPR001650) - T[331-412] 2.1E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IF4A3_HUMAN | 38.133 % | 278 | 2.82E-89 |
| IF4A1_HUMAN | 39.295 % | 259 | 2.83E-82 |
| DDX6_HUMAN | 74.083 % | 688 | 0 |