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- Transcript 'Boleac.CG.SB_v3.S18....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S18.g03958.01.t
Possible name(s)
LHCGR; RXFP1; TSHR
Gene model
Location
S18 [327,893 / 336,966]
Amino acid sequence
Length: 1,021
>Boleac.CG.SB_v3.S18.g03958.01.p
MLLRRRIQVLFVVILFSTLTFIVVESRRNIDEPVFFSCNDGRKLHYEEYCDGSQNCLNGE
DENTSPKSRQQMHRYRNHNADTALFYRCVNPANDHHGFCLVTREQVCTSEVMCSNLTPCD
LNCDSHYRCNNGTCLLRSTVCDNDPCSGCEEDHGWSNGVGFKCARNGAACVLPQQLLYDN
VSDCDNGADLCFGDDPNLSRDPSRSVDVRKCFRCLRGDMIIATANVCDGIIDCSDMSDEC
ACASGAPEICHQVVTKSLQIEKAXPIGQKGLLSTNATXVECGIGEIKCKNSKCIRTDAVC
DGTLDCGEDETFEICRGTIACKDATKSEKCRCHLDREERSCXSVSATACDGIADCPPPQL
HGXQIWTLDTFPEDECNATCTSQPSPFVCETAHSVHFRQRLYGAPCILPNNMDSSNAYTE
EIEGWQYCDGVIDCELTASDEDECEKRFYCNATKLGFVSIREDQVCDGIIDCIDGKDESA
ARCSDRNDMQRFSCSALGGKMVSIDTSNRCNSIINCDDASDEMGCDDGRFYCENGEAPFF
VSINQVQDGISDCTDWSDECPSIDGSTXQGFSSRTEMIDNPWLRXMVWIMGILAVVGNGI
VIFHEAKRLRRPGRTTPAIKANRTLILNLAISDFLMGIYLLSLGTVAVKLQGXYCSKDNE
WXAGTFCVSLGIISVISGESSVMTMVILTXCXMYAVLXPFKSSTQPSQRIVVSLICLSWA
LSLVLAFLPVSSNLAHIFIAGVDFVFNPFVTGTDVSLHSAKNVFSKVMTYYQWNSTQNNE
DLNSXLIGASWEDLQEKSNQYGLQYFDPKTYWGYYSAASVCIPKFFITTSDPAWVFSLIV
NLFNMLAFSFVAVSYIIIYVLSRRKPSEFRDAKIERKQMKSIQRKVLRLVATDFCCWVPX
CVMAFVKLAGYHVSEESYAFAAIILLPLNSALNPILYSDFLDTTIHRTIDAFRTWTSSLH
SAGTDQTSNRHPEIDQQPENVKLTARKDFIEVVPPEGKKETILSNPTSPVSNSEDSEKRE
T
Nucleotide sequence
Length: 3,492
>Boleac.CG.SB_v3.S18.g03958.01.t
TTGTCTCAGATTTGATTAGATGCGCTAGTTAGGCTTTCTGCAACGAGTCCAGAGTGTATT
CTGAGATGTTGCTTCGGAGAAGGATTCAAGTATTGTTCGTGGTGATCCTATTTTCAACGC
TAACTTTTATTGTGGTCGAAAGTCGACGTAATATTGATGAACCTGTGTTTTTTTCGTGCA
ATGATGGCAGAAAGCTGCATTACGAAGAATATTGCGATGGATCCCAAAATTGTTTGAACG
GGGAAGACGAAAACACATCGCCTAAATCTAGGCAACAAATGCATCGTTATCGAAATCATA
ATGCTGACACGGCATTATTTTACAGATGCGTAAATCCCGCAAATGATCACCATGGATTCT
GCTTAGTCACTCGAGAGCAAGTGTGCACTAGTGAAGTGATGTGTTCCAATCTGACACCGT
GTGACTTGAATTGCGATTCTCATTACCGATGTAATAACGGAACTTGTTTGCTTCGAAGTA
CAGTGTGCGACAACGATCCGTGTTCTGGATGTGAGGAAGACCATGGTTGGTCCAACGGAG
TAGGATTTAAATGTGCAAGAAATGGTGCCGCCTGTGTTTTGCCTCAACAACTTCTCTACG
ACAACGTTAGCGACTGTGACAATGGCGCAGATTTGTGCTTTGGAGATGATCCCAATTTAT
CAAGGGATCCATCGCGGAGTGTCGACGTGAGGAAATGTTTTCGATGCTTACGAGGTGACA
TGATCATTGCAACAGCCAATGTTTGTGATGGAATAATCGACTGCTCTGATATGTCAGATG
AGTGCGCATGCGCGTCTGGAGCTCCGGAAATCTGCCATCAAGTGGTCACCAAGAGCCTTC
AGATCGAGAAGGCCNGACCTATTGGTCAGAAAGGGCTGTTATCAACAAACGCAACTGNCG
TTGAGTGTGGTATCGGCGAAATCAAATGCAAGAATAGTAAGTGTATCAGGACGGATGCTG
TCTGTGACGGAACTTTGGATTGTGGCGAAGATGAAACGTTTGAAATTTGTAGAGGCACGA
TTGCATGCAAGGATGCAACCAAGTCTGAAAAATGCAGATGCCACCTAGATCGAGAAGAGC
GAAGTTGCANATCTGTTTCTGCGACAGCTTGTGATGGAATCGCTGATTGTCCTCCTCCAC
AGTTGCATGGANGGCAGATATGGACTTTGGACACATTTCCAGAAGACGAATGCAATGCAA
CTTGTACTTCTCAGCCCAGTCCATTTGTATGCGAGACGGCGCATTCCGTTCATTTTCGGC
AGAGACTGTACGGCGCGCCTTGTATTCTTCCTAACAATATGGACTCATCCAATGCATACA
CAGAAGAAATTGAAGGCTGGCAATATTGTGACGGTGTCATCGACTGTGAGTTAACGGCAA
GTGACGAAGATGAGTGCGAGAAAAGATTTTACTGCAATGCAACGAAATTGGGTTTTGTTA
GCATTCGAGAAGATCAAGTTTGTGACGGAATCATCGATTGTATCGACGGAAAAGACGAAA
GCGCTGCGAGATGCAGTGATAGGAACGACATGCAACGATTTTCTTGTTCCGCTCTTGGCG
GTAAAATGGTGAGCATCGATACATCAAATCGATGTAACTCGATCATAAACTGCGACGATG
CGTCAGATGAGATGGGCTGTGATGATGGAAGATTTTATTGTGAAAACGGAGAAGCACCTT
TCTTTGTATCCATAAACCAGGTACAGGATGGTATATCAGATTGCACTGATTGGAGCGATG
AATGTCCCTCTATTGATGGGTCTACATNACAAGGATTTTCCTCCAGAACTGAAATGATCG
ATAACCCATGGCTGCGTGNCATGGTATGGATTATGGGAATTTTAGCAGTTGTCGGAAATG
GGATTGTGATATTTCACGAAGCNAAAAGACTTAGACGGCCTGGCAGGACCACTCCTGCGA
TCAAGGCGAACAGGACTTTAATATTGAATCTTGCCATATCAGATTTTCTCATGGGCATTT
ATCTGTTGTCTCTTGGAACCGTCGCTGTGAAATTACAGGGTGNATACTGCAGTAAAGATA
ACGAATGGNGAGCGGGAACATTCTGTGTATCATTAGGTATCATTTCGGTGATATCTGGGG
AATCGTCCGTAATGACAATGGTGATTTTAACCNGTTGTCNGATGTACGCTGTGCTNNGAC
CGTTCAAATCGTCAACGCAGCCGTCCCAGCGGATTGTNGTGTCGCTGATTTGCTTGTCAT
GGGCTTTGTCTCTCGTTCTTGCATTTCTTCCTGTATCCTCCAACTTGGCGCATATTTTCA
TAGCGGGGGTGGATTTTGTGTTCAATCCATTCGTGACTGGAACCGACGTCTCTCTACACA
GTGCCAAAAATGTATTTTCCAAAGTGATGACGTATTATCAGTGGAACTCGACCCAAAATA
ATGAAGATCTCAATTCATTNCTGATAGGGGCATCATGGGAAGATCTACAAGAAAAAAGCA
ATCAATATGGGTTACAATATTTCGACCCCAAAACCTACTGGGGATACTACAGCGCTGCAA
GCGTGTGCATTCCTAAATTTTTCATCACTACATCCGACCCGGCGTGGGTTTTCTCTCTCA
TTGTGAATCTTTTTAATATGCTTGCATTTTCCTTTGTTGCTGTTTCATACATCATTATTT
ATGTCCTGTCAAGACGAAAACCTTCTGAATTCAGAGATGCAAAAATTGAACGCAAGCAAA
TGAAATCGATTCAACGAAAAGTGCTTCGTTTGGTGGCAACAGATTTTTGCTGTTGGGTTC
CANTATGTGTGATGGCGTTTGTGAAGCTGGCCGGTTACCACGTTTCTGAAGAATCATACG
CTTTCGCAGCCATCATCCTTCTGCCGTTGAACAGTGCGCTTAATCCTATCCTATATTCGG
ATTTTCTCGACACTACTATTCACCGGACAATCGACGCGTTTCGAACGTGGACTAGTAGTC
TTCATAGTGCTGGAACCGACCAAACGTCCAATAGACATCCTGAAATTGACCAACAGCCAG
AAAATGTCAAACTTACTGCACGTAAAGACTTCATTGAAGTTGTTCCGCCTGAGGGTAAAA
AAGAGACTATACTTTCTAACCCCACATCTCCAGTTAGCAACTCTGAGGATTCAGAAAAGC
GTGAGACTTGATATAAAAACAGTTTTGTCACTCAATATCGTCTAATGAAACACATAACCA
TCGCAAAATATAGCTCAGTGATTTGGCCCCTTCACTGAGATAACGCGAATGCAACTCCTA
TCTTGTCAATTCGCACTTATACGACGCAAGTCCTATAGCGTTTGCATATGATGCTAAAAA
GGTAAGTAGGAGAGCAAAACTGAGGGTTGTTTGGAGCGTTGTTGTCTCTTTGGGCACTGT
GATACTTTTATATCGGTTATAAAATGTGATATTTTACTGTGCGTTCAAGTCGAATTTACT
TGTAATTGTTTATACCTGCCAGTGCAAATTTGCCTGATTGTTAGCAACGTGGTAATAAAT
ATTAATGCTCTC
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[31-67] 0.079 - T[207-244] 0.092 - T[280-317] 0.011 - T[443-485] 0.019 - T[524-562] 0.098 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[33-64] 4.71E-5 - T[211-242] 3.53E-5 - T[277-310] 6.15E-6 - T[524-561] 4.06E-5 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[50-120] 6.4E-91 - T[226-969] 6.4E-91 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[169-190] 1.7E-15 - T[218-239] 1.7E-15 - T[291-312] 1.7E-15 - T[457-478] 1.7E-15 - T[501-522] 1.7E-15 - T[538-559] 1.7E-15 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[280-316] 9.675 - T[443-484] 9.2 - T[482-526] 8.575 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[281-310] 2.23727E-4 - T[525-559] 0.00235405 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[597-937] 20.733 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[621-730] 2.3E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|