- Transcript 'Haaura.CG.MTP2014.S5...' >
- Clone 'cicl067b12' >
- Transcript 'Boleac.CG.SB_v3.S1.g...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S1.g00221.01.t
Possible name(s)
SEMA6A; SEMA6C; SEMA6D
Gene model
Location
S1 [493,882 / 512,640]
Amino acid sequence
Length: 1,016
>Boleac.CG.SB_v3.S1.g00221.01.p
MMLWILQSMSISLLLANVGGSFPENSPAISFTGVHDVPNSFFTGGDDQSQRLHYVQDMKM
VKIAGKDYFAVTGREKLFLILPEQLTQVTESKIPYSEVYTWQTNEKSKALCVMKGQSEEN
CGNYIRVLEQMDENGNKLLVCGTNSYEPLCRYLSASMSEGRLILNETSDTFSGTEKCPFG
PDQSGASLYTGNSLYSATASDFNGRSHTIMRSLGTAKQLRTPKLDRKFLNEPRFVKMVED
GERVLVFMNELVKSENGDVRMLAYLAQVCKNDVGGQHVLVRQWTMFEKTRLNCSWNGFYF
DQLQDVSDPVNVRTGADQVTQTIYATFTTPEHSVPGSAVCAFTLDSIHDALLGKFRDERG
ILRYLSPTGGLKNAVLLKRQDVYDADRCQNATGEVDRAVNRIVVDVERDQLLIAFKYCVV
SAPLRSCAVHKCKRSCLESADPYCGWNGTKCIDHVLPSTSVEQNVFAKASNPTRDVDSLC
LDEGVPPIGKIPSSESTSKRSDDGVEIDKKIGDRPANGSSSVDNVGDNDDSSSDDSSAMA
KVKIGGMSIEIAAAIGVGLCIIGFVAGLCVSKACCKSGRKSADIEKQQEAMNVSKLSLSS
GSQVTIPESTSSYSSRRRGSAQHMPSMPTTGKRAVPNAYSTAPRIRHHSGNRTSDPSEYT
NPPTLRTEKPVGRMTSRHSTPVMVPGYPSTPNSIKDYSFTFQYDQVVQSTEHVLDDVKEV
IEQQQRRSAEMETLVEESPDDVRLRHQSSDSGKGSSPRNSLQTEEQDTVSTLSRNKPDNL
VLGPPPARGRKRLNSEPTSPTSTQPPLPPASTHKSVGRSTSMRSQYANVTVPSYPPPRTR
SESFSSHHSQQSTGTPMKRHQMPNNAFIGQGQPALYATLPINPQMVNPNTGVVVPQPEKF
NRQMSYDTYSQMTRYPSYIDHSDHPAMNMSDRFSSLPSRSQAHRSNKKSYPAQPYGVVPS
VQMRRSSATPHVPPYLKQMSTPAKFEQHSSRMGRGKYVPTPAVPGIPSPLPEQNAX
Nucleotide sequence
Length: 3,324
>Boleac.CG.SB_v3.S1.g00221.01.t
TTTTATTCAGAGTCGTTTGTTTTTAATTCATAGACATCGGTCTGCTGTGTAAGGATTTGC
CAAAGGATTACCAACTCAACTCAACAGCTCTGCTTGTTTCAATCTTGCTCTGTGTGAAAA
GGGGAACGTAAAGTGACATTTGTCGACCCAACATCAAAGTAGCATGTATATCTGATACAG
CTCATGGTTGACAAGGATTATTGACACCAGAAGCACTAACTGATATCATCACATATTCTG
GGAAACAACTCACGGAGGAGACGTACATACAAAACAATGATGTTGTGGATATTACAATCG
ATGAGTATTTCACTGCTTCTTGCAAATGTTGGTGGATCATTCCCTGAGAACAGCCCGGCT
ATTTCGTTCACTGGCGTTCACGATGTCCCTAATTCGTTTTTCACCGGTGGTGACGACCAG
AGCCAACGCCTTCACTACGTACAAGATATGAAGATGGTGAAAATAGCTGGAAAAGATTAT
TTTGCCGTCACAGGAAGGGAGAAACTGTTCCTCATTTTGCCAGAGCAGCTGACGCAAGTA
ACAGAGTCGAAAATACCTTACTCAGAAGTGTATACATGGCAAACTAACGAAAAATCAAAA
GCTTTATGCGTTATGAAGGGTCAAAGCGAAGAAAATTGTGGAAATTACATCAGAGTTCTA
GAGCAAATGGATGAAAACGGAAATAAGTTGCTTGTATGCGGAACCAACTCATACGAACCA
CTGTGTCGGTATCTATCGGCTTCAATGTCAGAGGGACGACTGATCCTCAACGAAACATCA
GATACCTTCTCCGGTACTGAAAAATGTCCTTTCGGTCCGGACCAATCTGGCGCAAGTTTA
TACACCGGGAACTCCTTGTACTCGGCGACAGCTTCCGATTTTAACGGTCGTTCTCACACC
ATTATGAGAAGTCTAGGAACTGCTAAACAACTACGAACACCAAAGTTGGATCGTAAATTT
TTGAACGAGCCACGCTTTGTGAAAATGGTGGAAGATGGAGAACGGGTGTTGGTTTTTATG
AACGAACTAGTCAAGTCAGAAAACGGCGACGTCCGAATGCTAGCTTATCTAGCACAGGTC
TGTAAAAACGATGTTGGTGGTCAACATGTTCTTGTACGGCAATGGACAATGTTTGAAAAG
ACAAGATTAAACTGTTCCTGGAATGGCTTCTATTTTGATCAGCTTCAAGACGTCTCTGAT
CCTGTCAACGTCAGAACAGGTGCTGATCAAGTAACTCAGACAATCTACGCAACTTTCACC
ACACCAGAACACTCTGTGCCGGGTTCTGCAGTCTGCGCATTTACGTTAGACTCGATCCAT
GACGCTTTGTTAGGAAAATTCCGTGATGAACGCGGCATTCTGCGTTATCTATCACCAACT
GGAGGGTTGAAAAACGCCGTTCTTCTGAAACGACAAGACGTTTATGACGCTGACAGATGC
CAAAATGCCACAGGAGAAGTTGACAGGGCTGTAAACCGAATTGTGGTTGATGTGGAAAGA
GATCAACTTCTAATAGCGTTCAAGTATTGCGTCGTATCTGCACCATTGAGATCTTGCGCC
GTTCACAAATGTAAAAGGTCTTGTTTGGAATCAGCTGATCCGTACTGTGGTTGGAATGGT
ACTAAATGTATTGATCATGTGCTACCTTCAACTAGTGTGGAACAAAATGTATTCGCTAAA
GCCTCCAATCCAACTCGTGATGTAGACTCTTTATGTCTTGATGAGGGTGTTCCTCCAATA
GGAAAAATTCCTAGTTCTGAATCCACATCCAAACGAAGCGACGATGGTGTTGAAATCGAC
AAGAAAATAGGCGATCGACCAGCGAATGGATCGTCAAGCGTAGATAACGTAGGAGATAAT
GATGACTCATCAAGTGATGATAGCTCTGCAATGGCAAAAGTCAAAATCGGTGGGATGTCG
ATCGAAATCGCAGCCGCGATCGGTGTTGGACTATGCATCATTGGATTTGTAGCCGGATTA
TGCGTCAGCAAGGCGTGTTGCAAGAGCGGTAGAAAATCTGCTGATATCGAAAAACAACAA
GAAGCAATGAACGTGTCGAAATTGTCGTTGAGTAGCGGAAGCCAGGTTACTATTCCTGAA
TCTACATCTAGCTACAGCTCAAGGCGCCGTGGCTCTGCGCAACATATGCCATCAATGCCT
ACCACAGGGAAAAGGGCGGTACCAAATGCATATTCTACAGCACCTCGCATTCGCCATCAC
TCAGGAAATCGTACGTCAGATCCTTCTGAATACACAAACCCGCCGACCTTGCGAACAGAG
AAACCTGTTGGCAGGATGACTTCCCGCCATTCAACTCCAGTGATGGTACCTGGCTATCCA
AGCACGCCAAACTCAATAAAGGACTATTCCTTCACATTTCAATATGATCAAGTGGTTCAG
AGTACAGAACACGTACTTGATGATGTTAAGGAAGTTATTGAGCAACAACAGAGGCGTTCT
GCCGAGATGGAAACATTGGTTGAAGAATCGCCTGACGACGTAAGACTACGACATCAGTCA
AGCGATAGCGGAAAAGGATCAAGTCCAAGGAATTCATTACAAACAGAAGAACAAGACACA
GTGTCTACGTTAAGTCGCAACAAACCAGATAATCTTGTTCTGGGACCGCCACCAGCACGA
GGTCGTAAGAGACTTAATTCAGAGCCAACTTCACCAACATCAACACAACCACCTTTACCA
CCAGCTTCAACTCATAAATCAGTGGGAAGATCCACTTCAATGAGATCGCAATACGCCAAC
GTAACTGTTCCTAGTTACCCACCTCCGCGTACAAGAAGCGAATCCTTTTCTAGTCATCAT
TCACAGCAAAGCACTGGCACACCTATGAAGAGGCATCAAATGCCTAACAATGCGTTCATA
GGACAGGGCCAACCTGCTCTGTATGCAACTTTACCGATTAATCCACAAATGGTTAATCCA
AACACTGGGGTGGTTGTTCCACAGCCTGAGAAATTCAACAGACAAATGTCTTACGACACG
TATTCTCAGATGACGAGGTATCCATCCTACATCGACCACAGCGACCATCCAGCGATGAAT
ATGTCAGATCGTTTTTCTAGTCTTCCATCGCGGTCACAAGCACATCGATCCAACAAGAAG
TCATATCCAGCACAACCGTACGGAGTAGTACCTTCAGTGCAAATGCGTAGAAGTAGTGCA
ACGCCACATGTTCCACCATACCTGAAGCAGATGTCTACCCCGGCCAAGTTTGAGCAACAT
TCTAGCCGAATGGGAAGAGGTAAGTATGTGCCGACACCGGCAGTGCCGGGAATACCGTCC
CCACTACCGGAACAAAATGCGNTA
| PANTHER |
Semaphorin (IPR027231) - T[11-358] 2.6E-94 - T[361-852] 2.6E-94 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[19-369] 1.4E-78 |
| ProSiteProfiles |
Semap_dom (IPR001627) - T[26-360] 51.064 |
| SMART |
Semap_dom (IPR001627) - T[55-441] 9.9E-45 |
| Pfam |
Semap_dom (IPR001627) - T[71-357] 6.1E-67 |
| SUPERFAMILY |
Semap_dom_sf (IPR036352) - T[85-430] 4.71E-72 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SEM6A_HUMAN | 36.798 % | 208 | 2.09E-55 |
| SEM6D_HUMAN | 32.24 % | 212 | 1.95E-56 |
| SEM6C_HUMAN | 36.667 % | 199 | 1.94E-52 |