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TRANSCRIPT CARD

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  1. Clone 'cicl047k07' > 
  2. Transcript 'Boschl.CG.Botznik201...' > 
  3. Transcript 'Harore.CG.MTP2014.S1...' > 
  4. Transcript 'KH2012:KH.C10.87.v2....' > 
  5. Transcript 'Boleac.CG.SB_v3.S1.g...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S1.g00287.01.t

Possible name(s)

LRFN1; LRFN4; LRFN5

Gene model

Boleac.CG.SB_v3.S1.g00287

Location

S1 [1,095,107 / 1,099,785]

Sequences

Amino acid sequence

Length: 808

>Boleac.CG.SB_v3.S1.g00287.01.p
MDXNGMLGLILTVLLSAASIRVSESASCPQSCDCTNICPYDDSSLCHSIATKKNPWAHIS
CKYLGENATYPTSSLSIEQKXTNPCMLCNINNAGNTPLFALSAKLYLQPYKDLHITCNSS
SQILHLDLSGGNLTRYPYGYLDFQQLKTLNLSSNAMGRNAVINLNMSSLHNLDLSYNTIS
TLVIHGSFTQLKILYLNHNVLHSIPLLHKFHMLSVLDLSFNEITFGSDFTHYKCKNALPS
KIETLILRGNDIKFFPRHNCWVLDAVTHLKTLDLGENLLSSIPGKYISDATLATIETLQL
DGNQIYFIPDNAFKKFQNLKYLSLSKNYLKSLPEQVLLVLNQNYIASSRPGSLKVLVEDN
PFICDCDLKLSLQNYISISHLSIEXEDINCSSPSIFEGEMLHNLAQSDLMCPYIKYSGDK
VLESCVENTDCYVACTISHTEVFWITPSEKVFNVEILQNDAGLNSSYVLDESGHNLIILD
IPLGLTGTYSCVANSSFSSTTIEIEISIIPSPIGSIVAIAVSSVTFALAIAINCVNMCKC
YCEALGLEEEPEYKENTAQSPLKPSKQLGLHESEASLNANKYYRKYDFACQHVFLDAVLK
GAHTVKQTLYDARNSEFSNNVWEYASHLRDRLHIELPSSVHMPRVSMPSISLPTISMPNI
SMPSMPNLQSINTNIERLGTSVISRSHNLASSVGSVFTLRWLKYGASDNESDSDSEQVSI
TQVQAHVHQGNEREGSDEVESLTPVSLSCNNADIEDVAVRSLPSITPLLSVHDEIFDVPI
SQSISPEEEQLLSTDPNVTTFYQFETTV

Nucleotide sequence

Length: 2,848

>Boleac.CG.SB_v3.S1.g00287.01.t
TTTAGTTTGTCTTTATTTAAAAAAAGGCTCTCAGTTTCTACTACATTGCCACCAGGCATT
TTGGTGAGGAGAAGCCCATGCACAAGCACATGTGCAGTGGGTTTACCTCTGTTGCTTGAA
AGTCATCACTTTTCTGCTTTGCTGAACGTCAAAGACCTTATTTGTTTCTGAATAGAAGAT
GCTCAAAGTTGAGGAGAAATCAATGTAACAAATCAAAAGTTCAATGGATCANAATGGAAT
GCTCGGCCTAATATTGACTGTGTTACTGTCAGCAGCAAGCATCAGAGTCTCAGAGTCTGC
ATCATGTCCACAATCGTGTGACTGCACCAATATTTGCCCTTATGATGATTCAAGCTTATG
TCATTCCATTGCCACAAAGAAGAATCCTTGGGCTCACATATCCTGTAAATACCTTGGTGA
GAATGCAACATATCCTACAAGCTCTCTATCAATTGAACAGAAGATNACCAATCCTTGCAT
GCTATGCAATATTAACAATGCTGGCAACACACCGCTGTTTGCATTATCAGCGAAACTTTA
TCTACAACCATACAAAGACTTGCATATCACTTGCAACAGTTCAAGTCAAATTTTGCACCT
TGACTTGAGTGGTGGTAATTTAACACGATATCCTTATGGCTATTTGGACTTCCAACAATT
AAAAACCCTCAATCTCAGCAGTAATGCTATGGGTAGAAATGCGGTCATAAACTTGAATAT
GTCGAGTTTACATAATCTCGACTTGTCCTATAATACTATATCCACCTTAGTCATTCATGG
TTCTTTTACCCAGCTTAAGATTCTCTACCTCAACCATAATGTATTACACTCCATTCCTCT
GCTTCATAAATTTCACATGTTATCTGTCCTCGATTTATCTTTCAATGAAATAACATTTGG
ATCTGACTTCACTCACTACAAATGCAAAAATGCCTTACCATCAAAGATAGAAACGTTGAT
TCTTCGAGGAAATGATATCAAGTTCTTCCCAAGACATAATTGTTGGGTCCTAGACGCTGT
CACCCATTTGAAGACACTTGATCTCGGTGAAAATTTGCTATCATCAATACCGGGAAAATA
TATATCAGATGCCACGTTGGCGACAATTGAGACTCTTCAACTGGATGGTAATCAAATCTA
CTTCATCCCCGACAATGCTTTCAAGAAATTTCAAAACTTAAAGTATTTATCTTTGTCAAA
AAATTATTTAAAAAGTCTACCTGAGCAAGTATTACTTGTACTTAATCAGAATTATATTGC
GTCATCAAGACCAGGTTCATTGAAGGTACTTGTAGAAGACAATCCGTTCATCTGTGACTG
TGATCTCAAGTTATCATTACAAAATTATATTTCTATTTCCCATTTGAGCATTGAAGNGGA
AGACATCAACTGTTCAAGTCCGTCGATTTTTGAAGGAGAAATGCTACATAATCTTGCACA
GTCAGACTTAATGTGTCCATATATCAAATACAGTGGAGATAAAGTGCTTGAAAGTTGTGT
GGAAAACACAGACTGCTATGTAGCGTGTACCATTTCTCATACTGAAGTTTTTTGGATTAC
TCCATCCGAGAAAGTTTTCAATGTGGAAATACTTCAGAATGATGCTGGGCTCAATTCAAG
TTATGTTTTGGATGAAAGTGGCCATAACCTCATCATATTAGATATTCCACTTGGGTTGAC
AGGGACGTACAGTTGCGTTGCAAACAGCTCATTTTCATCGACTACAATTGAAATTGAGAT
TAGCATAATACCAAGCCCGATCGGATCAATAGTTGCGATTGCTGTATCATCTGTGACTTT
TGCACTAGCAATTGCAATCAATTGTGTCAACATGTGCAAGTGTTATTGTGAAGCTTTGGG
TTTGGAGGAAGAACCAGAATATAAGGAAAACACAGCACAGTCACCACTAAAGCCCTCAAA
GCAATTGGGTCTCCATGAGTCAGAAGCATCACTCAATGCCAACAAATATTATAGGAAGTA
TGACTTTGCCTGTCAGCATGTATTCCTGGATGCAGTGTTGAAAGGTGCTCACACCGTGAA
GCAAACATTGTATGATGCTAGAAATTCTGAATTTTCAAACAATGTGTGGGAATATGCATC
TCACTTGAGGGATCGCCTTCATATTGAACTCCCATCTTCAGTCCACATGCCACGTGTTTC
AATGCCTTCCATATCACTTCCTACAATTAGTATGCCCAATATTTCAATGCCGAGTATGCC
AAATTTACAGTCTATCAACACCAATATCGAGCGTCTTGGCACAAGCGTTATTAGTCGCAG
TCACAACCTTGCATCATCTGTTGGATCGGTCTTCACGCTGAGATGGTTGAAGTATGGAGC
ATCTGATAATGAAAGTGACTCTGATTCTGAGCAAGTGTCTATTACTCAAGTGCAAGCTCA
CGTTCATCAAGGAAATGAAAGGGAAGGCAGTGATGAAGTCGAATCGCTGACCCCTGTGAG
CTTGTCCTGCAATAATGCTGATATAGAAGATGTTGCAGTGAGGTCTTTACCTTCCATAAC
ACCTCTTCTATCTGTTCATGATGAGATCTTTGATGTTCCAATTTCCCAGTCAATTAGTCC
AGAAGAGGAACAACTATTGAGTACTGACCCAAATGTGACGACTTTTTACCAGTTTGAAAC
GACTGTTTGAGACACTGTACACTGGCCTTGCAGGAAATACTGTAGCTAAGAGGTGGTGAA
GCACTCGTCGTATTCGGACTTATATTTCGTACTCGTACTTATGGATTTGAACCTATGGGC
CTTGGCTGGCTTTACTCTTCTGTCTTAGACTGCCTTTAGAAATACATACAACTCTTATTT
AGATTTTCTCGCTGCAAGTCGAATGCTA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[111-292] 1.8E-24 - T[293-414] 4.4E-19
ProSiteProfiles
Leu-rich_rpt (IPR001611) - T[145-166] 5.001 - T[168-189] 6.418 - T[190-211] 7.35 - T[212-233] 6.28 - T[241-262] 5.055 - T[268-289] 7.181 - T[294-315] 6.372 - T[318-339] 8.112
SMART
Leu-rich_rpt_typical-subtyp (IPR003591) - T[166-186] 210.0 - T[188-209] 40.0 - T[266-290] 9.6 - T[292-315] 1.3 - T[316-339] 7.6
Pfam
Leu-rich_rpt (IPR001611) - T[295-337] 1.0E-8
ProSiteProfiles
Ig-like_dom (IPR007110) - T[393-507] 7.577

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value