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  1. Transcript 'Boleac.CG.SB_v3.S256...'

Transcript Model

Transcript Id

Boleac.CG.SB_v3.S256.g06107.01.t

Possible name(s)

LARP6; LARP7; SSB

Gene model

Boleac.CG.SB_v3.S256.g06107

Location

S256 [61,090 / 67,036]

Sequences

Amino acid sequence

Length: 624

>Boleac.CG.SB_v3.S256.g06107.01.p
MTNTGMPILPLNSAMYHPMVPQSNLQGLMPLQYVPYPRTHINNMGIPQPQYLPYVATETQ
DIFNATVRRWPMHYDAPRLPRYSPGFPNGTFVDECTPFPSQLVPMGPAAYPYPPLAHQVV
PPAPNPAHYINPHSNQNTPDPHSIQNTPDPQSNQNTHDPXSNQNTHDPHSNQNTHDPHSN
QNTHDPQSDQNIFDPRLNPNTPEFHTKSSITAQIALALTDINDGVINVTSSGDSGIGSPG
SSPFDFDDLKKALKHRLLSYEEIKIETHPFWTVAQDNKYLNSIRRLPPPPEQCLAIVEQI
ELYMSDDYLAGDKYLLHQIKSKKEGYVSIKHMKSFKRMKKIARDWVVLRSAIVRGSKHLV
ISEEGSRLRRKEPLPELLRQPRKISILLAIRLPTDFSAVDKVTSLFREFGELVSVRLLKP
DKPVPVDIRNYATQIPDLGATLCAVVQYECADNALSAVRLLKYKTRHCKPEDDTTDAEDK
NKLKKDGDRSDEDNLLLNKITEKFPDLGEMRLALLGPRVRRTLYRQDRKKQDDPAGHSES
HNPDDEGTDTETLTPSPEILARGQCIDTSPISANQSSTSPSVNQRNDASLMRGPKQMVKN
NVREPVGPTEECMGFGYERAKRHA

Nucleotide sequence

Length: 2,439

>Boleac.CG.SB_v3.S256.g06107.01.t
ATTCTTGTTGTTTCAGTGGCAGGCCTACAGCACTTGAATACATACGGCATTTTCTTAGTG
CCTTGTTTTTATTGTTGAATGTAAAGTCTGAGCCTTGAGCCGCTTAAGCCTATACACAAA
TGACCAACACAGGAATGCCGATCCTTCCATTGAACTCGGCAATGTACCATCCAATGGTGC
CTCAGTCTAATTTGCAAGGCTTAATGCCCCTCCAATACGTTCCATATCCAAGGACTCACA
TAAACAATATGGGTATACCTCAACCTCAGTACTTACCGTATGTTGCAACAGAGACACAGG
ACATCTTCAATGCAACGGTGCGACGTTGGCCAATGCATTATGATGCGCCACGCTTACCAC
GGTACAGTCCTGGTTTTCCAAACGGTACTTTTGTAGATGAATGTACTCCCTTTCCAAGTC
AGCTGGTACCAATGGGACCTGCTGCATATCCGTACCCACCGTTGGCACATCAAGTAGTTC
CGCCAGCACCAAATCCTGCTCACTACATCAATCCGCATTCGAACCAGAACACTCCCGATC
CGCATTCGATCCAGAACACCCCCGATCCGCAATCGAACCAGAACACCCACGATCCGNATT
CGAACCAGAACACCCACGATCCGCATTCGAACCAGAACACCCACGATCCGCATTCGAACC
AGAACACCCACGATCCGCAATCGGACCAAAACATCTTCGATCCGCGATTGAACCCAAACA
CGCCGGAATTCCACACAAAATCATCCATAACAGCTCAGATTGCCCTTGCACTTACCGATA
TCAATGATGGGGTTATTAACGTAACAAGCAGTGGAGACAGTGGTATCGGCAGTCCCGGAT
CAAGCCCGTTCGATTTTGATGATCTAAAAAAGGCTCTTAAGCATCGTCTGCTCAGTTATG
AGGAAATAAAGATTGAAACGCATCCGTTCTGGACCGTTGCACAAGATAATAAATACTTGA
ATAGCATCCGACGGTTACCACCACCACCAGAGCAATGTTTGGCGATAGTGGAGCAGATCG
AACTCTACATGTCTGATGACTATTTAGCCGGTGACAAATATCTATTACATCAAATAAAAA
GTAAGAAAGAAGGATACGTCAGCATCAAACACATGAAGTCGTTCAAAAGAATGAAGAAGA
TTGCACGTGATTGGGTGGTACTTCGCAGTGCCATCGTGCGGGGTTCTAAACATCTCGTTA
TTAGCGAAGAGGGGTCGAGATTGCGTAGAAAAGAACCGTTGCCGGAACTGTTGCGACAAC
CTAGAAAGATATCCATCCTTCTGGCTATACGTCTTCCGACTGACTTCAGCGCGGTCGACA
AAGTGACGTCTCTGTTTCGTGAATTTGGGGAATTGGTATCGGTCCGATTGCTAAAACCTG
ACAAGCCAGTACCAGTAGATATTCGCAATTATGCTACTCAAATTCCAGACCTTGGAGCTA
CGCTTTGCGCCGTGGTGCAGTACGAGTGTGCGGACAATGCGTTGTCGGCCGTTCGATTGC
TAAAATATAAAACGAGACACTGTAAACCTGAGGACGATACCACTGATGCTGAGGATAAGA
ACAAGTTGAAGAAAGATGGGGATCGTAGCGACGAGGACAATCTGCTGCTAAATAAGATAA
CAGAAAAATTTCCTGATCTTGGCGAAATGAGGCTTGCTTTACTTGGACCCCGTGTGCGAA
GGACGTTGTACCGTCAGGACAGAAAGAAGCAAGATGATCCAGCGGGCCATAGCGAGTCGC
ATAATCCCGATGACGAAGGCACTGATACGGAAACACTAACCCCATCACCGGAGATTCTGG
CCAGAGGGCAATGCATTGACACCTCACCCATATCCGCAAACCAAAGCAGTACCTCTCCAT
CCGTAAATCAACGTAACGATGCCTCACTGATGAGAGGACCGAAGCAAATGGTAAAAAATA
ACGTCAGAGAGCCGGTGGGACCGACTGAAGAGTGTATGGGTTTCGGATACGAAAGAGCTA
AAAGACACGCCTGATATATTTTTCTATGAAAGGCTGGATGTTGGAGGTAGGGTCATGGTA
GGATCATGAACGATTCGTATGCCCGCGCACGTGTTTTGCTGAGATAGATACTTTTGTATA
TTTTTAGCACAAAGTAATTTGTATATGTAAAGGAATTTTTGTATTTATTTTAGTACCGGT
AGTACTTTTTCTCCTTACTTGATTTTTGCATCAAACCTTCATAGAAAGCGTAAGTGAATT
CTTAACAAGCGCGAAAATCATACTTCGAGGTTTTTTGAAATATCAGACTGTGTACTAAAC
CGAACTCAAGGGTCATTTTCATGACAATGTCGTCATCACTTAACTGAACTGTTGAACTGC
CTCAGCAACATATGCGACTGGTTTTCATACGGTCTACTTTTTAGAGTGTAGCATTTTCAG
TTTGCGAATACATCCACATCTTGTTGATGTCACATTCCA

InterProScan

ProSiteProfiles
La_HTH (IPR006630) - T[286-378] 19.196
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[287-375] 3.7E-19
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[288-378] 1.18E-15
SMART
La_HTH (IPR006630) - T[290-371] 1.1E-13
Pfam
La_HTH (IPR006630) - T[296-351] 3.7E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LARP6_HUMAN 32.086 % 101 1.19E-22