- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S25....'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S25.g05951.01.t
Possible name(s)
COPA; PKD2; PKD2L1
Gene model
Location
S25 [78,138 / 93,563]
Amino acid sequence
Length: 2,052
>Boleac.CG.SB_v3.S25.g05951.01.p
MEQDVHGKRGYNHGQPTEMSMEAYVSTVGANRHSSYDSVREGEYDHDDDHVERKSWWGSL
KKGVRGLWGTRHTEDTSNDRELYIRTTLRELIIYIFFLVTLCILTFGMTSSTHFYYTKVM
QELFLDTQFNDVTNNFRGITTMQDFWRFTEGPLMNGLYWERWYNNQNVSQEDLGYIYYEN
KLLGVPRMRQLKIVNGSCQVHPDFQNEITACYDSYHADKEDRAPFGLLNGTAWIYQTEDE
LDGSSHWGLLDVTYSGAGYVQDLLTTKAESAAIIEDLKTNLWLDRGTRVVFIDFTVYNAN
INLFCVIRLVVEFPATGGALPSWQFRTVKLIRYVSNYDYFLMACEILYVAFIIYYIVEEA
LEINRHKCKYFKSFWNCLDIIVILLSVVAFAFNIYRTIKVDELLNGLLNNPLVYADFEYL
GFWQMQYNNMVAVVVFFAWIKIFKYISFNRTMTQLQSTLSRCSKDIAGFAVMFFIIFFAY
AQLGYLVFGTQVKDFSTFEESIYTQFRIVLGDFDFHELESANRLLGPIFFLTYVFFVFFV
LLNMFLAIINDTYSEVKAEISMQKSEFEITDYIKRGYNKVLEKLSLKKDRIRDIQDAIQS
ADLNHDRQLDWEEWRLDLKMRGIPDAEIEAVFAKYDQDGDMVLNEEEQKRLHADLEKERA
NLNNDIGSIVSKIDAVIVKLEAMERAKLKRRENMGKLLDNINDDXPDKSSGMERMIKEEI
DQIISEEVGIAHCKMLTKFESKSARVKGLSFHPKRPWVLASLHSGVIQLWDYRMCTLIDK
FEEHDDYFDPVTFLDGACPVRGVCFHNQQPLFVSGGDDYKIKVWNYKLKRCLFTLLGHLD
YIRTTVFHHDYPWILSASDDQTIRVWNWQSRTCVAVLTGHNHYVMSANFHPKEDLVVSAS
LDQTIRVWDISELRDAQPIQWTAKTKMEMAKHMIEGSKAIVKFILEQFLFLRLFCLLSVA
LLIGACNFGSGLRKKNLSPGSDDTRSPGAGPGAIELFGTSDVVVKHVLEGHDRGVNWACF
HPTMPLVVSAADDRLVKMWRMNESKAWEVDSCRGHYNNVSCCAFHPKQELILSASEDKSI
RVWDMSKRTGVQSIRRDHDRFWILACHPTLNLFAAGHDSGMVIFKLDRERPAYATNQNML
YYVKDKYLRGLDFNTSKDTPIMQLRGGSKSAPYMLSYNPAENSVLVTTRQSNIENSVYDL
YQIPKNPDSSNPDAPEGKRSSAITAVWVARNRFATLDRTHTIVIKNMKNDIMKKIQVAGI
DEIFYAGIGSLLLRTAEGITLYDVQQRRSLASLKASKVKRAIWSSDMSHVALLAKHNIII
CNRKLEASATVHENTRVKSAAWDENGVLIYTTSNHIKYALLNGDHGIIRTLDLPIYVTRV
RGTSVFCLDRETKPRVLGIDPTEYRFKQALINRKYDEVLNMVRNAKLVGQSIIAYLQQKG
YPEVALHFVKDEKTRFSLALECGDIEVALAAAKALDDKQCWEALGEVALLQGNHQVVEMA
YQRTKNFDKLSFLYLLTGNLEKLRKMMKIAEIRKDTSGQYQAALYLGDVAERVKILRGCG
QLPLAYLTAATHGMEEEAESLREELGDDQKVPDVAPDAQLLQPPPPISQFEENWPLLTVS
KGFFEGSMALGKAGAMAAADMDGDEDAAGWGDDADIILDEVIESSLLIESFQPSFQPKPT
FNQDGAIVEDYGDDMDEGGDDGEGGGWDVDDDDLELPADLVLPDIVASEGGEGYFVPPTK
GTAQTQVWCNNSQLPVDHILAGSFETAFRLLHDQVGVVNFEPYKTIFMRTYARSRTAYIA
LPSLPCTFSYPHRNWREAGAKAGLPLVGTKLDDLVSWLQDAYKLTTAGKFEDAIKKFRYI
LLSVPLLVVDNKQEISEAQRLISICREYIVGLSMEQQRKEIPKESLDDQKRNCEMAAYLT
HCQWEPLHLILALRTAQTLAFKLKNYKTAAGFARRLLELGPKPQIAAQTRKIIAACDKNP
RDAHELRYDAHNPFDICAASYVPIYRGKPVEKCPLSGACYQPSYKGEVCRVSQCTEIGKD
CIGLRVCSIQFR
Nucleotide sequence
Length: 6,400
>Boleac.CG.SB_v3.S25.g05951.01.t
ATGGAGCAAGACGTACACGGGAAACGTGGGTATAATCATGGACAACCGACCGAAATGTCA
ATGGAGGCTTACGTTTCCACAGTGGGAGCAAACCGACATTCCTCCTATGACAGCGTTCGG
GAAGGTGAATATGATCATGACGATGATCATGTCGAAAGAAAAAGTTGGTGGGGTAGTTTG
AAGAAAGGTGTCCGTGGGTTATGGGGAACAAGACATACGGAAGACACAAGCAATGACCGC
GAATTGTATATTCGTACTACATTACGTGAGTTGATAATATACATTTTCTTTCTGGTCACA
CTTTGCATTTTGACTTTTGGCATGACAAGCTCGACTCATTTCTATTACACTAAAGTGATG
CAGGAATTGTTTCTTGACACTCAGTTCAATGATGTCACCAATAATTTCCGTGGGATCACT
ACAATGCAAGATTTTTGGCGTTTCACAGAAGGGCCCTTGATGAATGGGTTGTATTGGGAG
CGATGGTACAACAATCAAAATGTTTCACAAGAAGATCTTGGGTATATATATTATGAAAAC
AAGTTACTTGGTGTTCCAAGAATGCGACAATTGAAAATTGTGAACGGGTCGTGTCAAGTC
CACCCCGATTTTCAAAATGAAATCACTGCATGTTATGACTCGTATCATGCTGATAAGGAA
GATAGAGCCCCTTTTGGTCTGCTCAATGGAACAGCTTGGATATACCAAACAGAAGATGAA
TTAGATGGTTCATCTCACTGGGGATTGCTTGATGTTACATATTCCGGTGCGGGTTATGTA
CAAGATCTNTTGACGACTAAAGCAGAATCAGCAGCTATTATTGAAGATTTGAAAACAAAT
TTATGGTTAGATCGTGGAACTAGAGTTGTCTTCATTGACTTCACTGTCTATAACGCAAAC
ATCAATTTGTTCTGTGTGATCCGTCTTGTGGTTGAATTCCCTGCAACTGGAGGAGCACTC
CCGTCATGGCAGTTTCGAACTGTAAAATTGATTCGGTATGTCTCTAACTATGATTACTTC
TTGATGGCTTGTGAGATATTGTATGTTGCTTTCATCATCTATTATATTGTGGAAGAAGCG
CTGGAGATCAACCGACACAAATGCAAGTATTTCAAAAGCTTTTGGAATTGTTTGGATATT
ATCGTGATATTATTGTCAGTGGTTGCTTTTGCATTCAATATTTATCGTACTATAAAAGTC
GATGAATTGCTGAATGGATTGTTGAATAACCCACTGGTTTATGCCGATTTTGAGTACCTT
GGATTTTGGCAAATGCAATACAACAATATGGTTGCTGTTGTGGTGTTTTTTGCATGGATA
AAAATTTTCAAGTATATCAGTTTCAATCGCACCATGACTCAATTACAATCAACCTTATCT
CGATGCTCCAAAGATATTGCCGGATTTGCTGTGATGTTCTTCATCATATTTTTTGCTTAT
GCACAACTTGGATATCTTGTGTTCGGGACTCAAGTCAAGGATTTCAGCACTTTTGAAGAA
AGTATTTATACTCAATTTCGTATTGTGCTTGGAGATTTTGACTTTCACGAATTGGAATCT
GCGAACCGCTTGCTTGGACCAATATTTTTCCTCACTTATGTCTTTTTCGTGTTCTTTGTC
CTATTGAACATGTTCCTTGCTATCATCAATGACACGTATTCTGAGGTGAAAGCGGAAATT
TCAATGCAAAAAAGCGAGTTTGAAATCACTGATTATATCAAGCGAGGCTATAACAAAGTT
CTTGAAAAACTATCCCTGAAAAAGGATAGAATTCGGGATATTCAAGATGCCATACAATCA
GCGGATCTCAACCATGATCGTCAACTTGACTGGGAAGAATGGAGATTGGATTTGAAAATG
CGGGGAATTCCAGATGCTGAAATTGAGGCAGTGTTTGCTAAGTACGATCAAGATGGAGAT
ATGGTTTTGAATGAGGAAGAACAGAAACGCTTACACGCTGATCTGGAAAAAGAAAGAGCT
AATTTAAATAATGACATTGGGTCGATTGTATCCAAAATTGATGCTGTTATTGTCAAGCTG
GAAGCGATGGAGCGTGCAAAATTAAAACGGCGTGAAAATATGGGTAAGTTACTTGACAAT
ATCAACGATGATAGNCCAGATAAAAGCTCAGGAATGGAAAGAATGATCAAAGAAGAAATC
GATCAGATTATTTCTGAAGAAGTAGGGATAGCTCACTGCAAAATGTTGACCAAGTTTGAA
TCCAAATCGGCAAGAGTCAAAGGTTTGTCTTTTCACCCCAAGAGGCCATGGGTACTAGCG
TCACTTCACAGCGGTGTGATTCAACTGTGGGATTACCGCATGTGCACTCTCATCGATAAG
TTTGAGGAGCATGATGACTACTTTGATCCAGTTACATTTTTGGATGGAGCTTGTCCTGTT
CGAGGAGTTTGCTTTCATAACCAACAGCCATTGTTTGTGTCCGGTGGTGATGACTACAAG
ATCAAGGTTTGGAATTATAAACTAAAGAGATGTTTGTTCACTCTTCTTGGTCATTTGGAC
TACATTCGAACTACCGTGTTTCATCATGATTATCCCTGGATACTAAGTGCTTCTGATGAC
CAAACAATTCGTGTTTGGAACTGGCAATCTAGAACCTGTGTCGCAGTGCTGACTGGTCAT
AATCATTATGTCATGTCTGCCAACTTTCATCCAAAAGAAGATCTTGTCGTTTCAGCTTCT
CTCGACCAAACTATCCGCGTTTGGGATATTTCAGAATTGAGGGATGCTCAACCCATTCAA
TGGACTGCAAAAACTAAGATGGAGATGGCTAAGCACATGATAGAAGGATCAAAAGCCATT
GTTAAATTCATATTGGAGCAATTTTTGTTCTTGAGACTATTCTGTTTGCTGAGTGTGGCG
CTTCTAATTGGTGCTTGCAATTTTGGTTCAGGCTTGCGTAAAAAGAATTTATCGCCTGGT
TCTGATGATACTCGATCCCCTGGTGCTGGGCCGGGTGCTATTGAACTTTTTGGAACTTCA
GATGTTGTGGTGAAACATGTTCTAGAGGGACATGATCGTGGTGTTAACTGGGCATGCTTT
CATCCCACCATGCCACTAGTTGTATCTGCTGCTGATGACAGATTAGTCAAAATGTGGAGG
ATGAATGAGTCTAAAGCGTGGGAGGTGGATTCCTGCAGAGGTCATTACAACAATGTGTCA
TGTTGCGCGTTTCATCCGAAACAAGAATTGATCTTGAGTGCATCTGAAGATAAGTCTATC
CGTGTCTGGGACATGAGTAAACGTACCGGTGTTCAATCCATCAGACGTGATCATGACAGG
TTTTGGATTTTAGCTTGCCATCCCACTCTTAACCTGTTTGCCGCTGGGCACGATTCTGGC
ATGGTTATCTTCAAATTAGACAGAGAAAGACCGGCTTATGCCACCAATCAAAATATGTTG
TATTATGTCAAAGATAAATATCTTCGTGGACTCGATTTCAATACAAGCAAAGACACACCG
ATAATGCAGTTGCGGGGGGGAAGCAAATCTGCGCCATACATGCTGTCTTATAACCCAGCT
GAGAACTCTGTACTGGTTACCACAAGACAATCAAACATTGAGAATTCCGTGTATGACCTG
TACCAGATTCCGAAGAATCCGGATTCCTCAAATCCTGACGCACCAGAAGGCAAGCGATCA
TCTGCTATTACTGCGGTTTGGGTAGCTAGGAACCGTTTTGCCACACTTGATCGCACTCAC
ACTATCGTTATCAAAAACATGAAGAACGATATCATGAAGAAAATCCAAGTGGCCGGAATT
GATGAAATTTTTTACGCTGGAATCGGGTCTCTACTTTTGCGTACTGCAGAAGGCATCACA
CTCTATGATGTGCAACAGAGAAGATCTCTTGCGTCATTGAAGGCGTCCAAAGTCAAGAGA
GCCATTTGGTCGAGTGACATGTCTCACGTGGCGCTGCTTGCAAAACACAACATTATAATT
TGCAATCGTAAATTGGAGGCATCTGCCACTGTGCATGAAAACACTCGGGTAAAATCTGCT
GCTTGGGATGAGAATGGCGTGCTTATCTACACAACGTCGAATCATATCAAATATGCCCTT
CTTAATGGGGATCATGGAATCATTCGCACTCTTGATTTGCCAATTTATGTGACACGTGTA
CGTGGCACGAGCGTATTCTGTTTGGACCGAGAAACTAAACCAAGGGTTTTGGGAATCGAT
CCAACTGAGTACCGGTTCAAGCAAGCTTTGATCAATAGAAAGTATGACGAAGTCCTTAAC
ATGGTGAGGAATGCCAAGTTGGTGGGACAGTCTATCATCGCCTATTTGCAACAAAAGGGA
TATCCAGAAGTTGCATTACATTTTGTCAAAGATGAAAAAACGAGATTCTCTCTTGCTTTG
GAATGTGGAGATATTGAGGTTGCCTTGGCAGCTGCGAAAGCATTAGATGACAAGCAATGT
TGGGAAGCATTAGGTGAAGTAGCTTTGCTTCAAGGAAATCATCAGGTTGTGGAAATGGCT
TATCAGAGAACTAAGAATTTCGACAAGCTTTCATTCTTGTATTTGCTCACTGGAAACCTC
GAAAAACTACGAAAAATGATGAAAATAGCTGAAATCAGAAAAGATACATCTGGACAGTAT
CAAGCTGCTCTTTACCTTGGAGATGTGGCAGAGCGAGTCAAAATTCTAAGGGGATGTGGT
CAATTGCCATTGGCTTATCTGACTGCTGCTACACATGGGATGGAAGAAGAAGCTGAAAGT
TTGAGGGAGGAACTTGGCGATGATCAGAAAGTTCCTGATGTTGCTCCTGATGCTCAACTC
CTTCAACCGCCACCACCAATCTCACAGTTTGAAGAGAATTGGCCGCTCCTGACAGTTTCT
AAAGGATTCTTTGAGGGATCAATGGCTCTAGGCAAGGCTGGCGCAATGGCCGCTGCTGAC
ATGGATGGCGATGAAGATGCGGCAGGTTGGGGAGATGATGCAGACATCATTTTGGATGAA
GTAATTGAGTCATCACTATTGATTGAAAGCTTCCAACCAAGCTTTCAACCCAAACCTACT
TTTAACCAGGATGGTGCAATCGTAGAAGATTATGGAGATGATATGGATGAGGGGGGTGAT
GATGGTGAAGGAGGTGGATGGGATGTTGATGATGATGATTTGGAACTTCCAGCTGATCTT
GTTCTACCCGATATTGTTGCTTCTGAAGGAGGCGAAGGATACTTTGTACCCCCTACAAAA
GGTACTGCCCAGACACAAGTATGGTGTAATAATTCTCAATTGCCGGTTGATCATATCCTG
GCTGGATCATTTGAAACTGCATTCAGACTCTTACATGATCAAGTTGGTGTCGTCAATTTT
GAACCGTACAAGACCATATTCATGAGAACATATGCTCGTTCACGAACTGCTTATATTGCT
TTGCCGTCCCTCCCATGCACCTTCAGTTACCCGCACCGGAACTGGAGAGAAGCGGGTGCA
AAAGCTGGCTTGCCTCTTGTCGGAACAAAGCTTGATGATCTCGTCAGTTGGCTGCAAGAT
GCCTACAAGTTGACTACTGCTGGCAAGTTTGAAGACGCAATTAAGAAATTCAGATATATT
TTACTGTCAGTGCCACTGCTTGTCGTTGACAATAAGCAAGAAATCAGTGAGGCTCAGCGT
CTTATTTCCATATGTCGTGAATACATTGTTGGCCTTTCAATGGAACAACAACGGAAGGAA
ATACCTAAAGAATCTTTAGATGATCAAAAGAGAAATTGTGAAATGGCAGCTTATTTGACA
CATTGTCAATGGGAACCGTTGCATTTGATTCTTGCTTTGAGGACGGCGCAAACGTTAGCT
TTCAAATTGAAAAATTACAAGACGGCTGCTGGTTTTGCAAGGAGATTGCTGGAACTTGGG
CCAAAACCTCAAATAGCGGCACAAACTAGGAAAATTATCGCTGCTTGTGACAAAAATCCA
CGAGACGCCCATGAGTTGAGATACGATGCTCATAATCCATTTGATATATGTGCTGCTAGT
TATGTGCCAATCTACAGAGGGAAGCCGGTTGAGAAATGCCCTCTCAGCGGGGCATGTTAT
CAACCTTCCTACAAGGGCGAAGTATGCAGAGTATCGCAATGCACTGAAATAGGAAAAGAT
TGCATAGGTCTGCGTGTCTGTTCGATACAATTTCGCTGAATTTTCGAATAGCTTTGGGTT
TTTTACTGCTGCTACTGGACTGGGTAGAGTTTATTCATTAATGAATACTTGCTGATGCAG
AAGGCGATTCTTTGTGGACAATCCTTCCTCGCTAGCTATGGCGGATTGCGATGATGCATT
CCGCTATGTTACATTATGTCTATTATGTGCAAGATTTAAATATAGAGAAATATCGTGGCA
TTGTTGTTGAAGCCTAAGGTTACGGTTCAGCTCAACAGGG
| PRINTS |
PKD_2 (IPR003915) - T[104-125] 9.5E-95 - T[175-194] 9.5E-95 - T[289-311] 9.5E-95 - T[344-366] 9.5E-95 - T[375-395] 9.5E-95 - T[421-446] 9.5E-95 - T[468-489] 9.5E-95 - T[529-550] 9.5E-95 - T[569-588] 9.5E-95 |
| Pfam |
PKD1_2_channel (IPR013122) - T[135-556] 9.7E-152 |
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[327-407] 2.0E-6 |
| SUPERFAMILY |
EF-hand-dom_pair (IPR011992) - T[512-653] 4.61E-12 |
| ProSiteProfiles |
EF_hand_dom (IPR002048) - T[589-624] 9.939 - T[625-658] 8.125 |
| SMART |
EF_hand_dom (IPR002048) - T[593-621] 7.9 - T[627-655] 1.9 |
| ProSitePatterns |
EF_Hand_1_Ca_BS (IPR018247) - T[602-614] . |
| SMART |
WD40_repeat (IPR001680) - T[732-771] 0.49 - T[774-825] 0.0031 - T[828-867] 3.3E-7 - T[870-909] 4.0E-10 - T[1001-1040] 1.1E-5 - T[1045-1084] 6.0E-9 - T[1087-1125] 200.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[732-914] 1.89E-68 - T[1004-1123] 1.89E-68 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[733-948] 2.2E-68 - T[969-1127] 4.7E-50 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[739-1093] 37.465 |
| Pfam |
WD40_repeat (IPR001680) - T[790-825] 2.5E-4 - T[830-867] 9.4E-7 - T[872-909] 2.7E-6 - T[1006-1039] 0.0065 - T[1049-1084] 1.4E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[800-834] 9.172 - T[835-876] 12.614 - T[877-918] 15.621 - T[1008-1049] 11.678 - T[1052-1093] 15.388 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[854-868] 1.5E-6 - T[896-910] 1.5E-6 - T[1071-1085] 1.5E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[896-910] . - T[1071-1085] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[1166-1573] 2.8E-136 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[1621-2052] 4.0E-176 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 63.424 % | 1688 | 0 |
| PKD2_HUMAN | 51.402 % | 737 | 0 |
| PK2L1_HUMAN | 60.033 % | 753 | 0 |