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TRANSCRIPT CARD

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  1. Clone 'cima878593' > 
  2. Clone 'AHC0AAA243YO01' > 
  3. Clone 'cima822469' > 
  4. Transcript 'KH2012:KH.C4.188.v1....' > 
  5. Transcript 'Cisavi.CG.ENS81.R0.1...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R0.1257582-1259214.14635.t

Possible name(s)

NR1H2; NR1I2; VDR

Gene model

Cisavi.CG.ENS81.R0.1257582-1259214

Location

R0 [1,257,581 / 1,259,214]

Sequences

Amino acid sequence

Length: 129

>Cisavi.CG.ENS81.R0.1257582-1259214.14635.p
IVDQIVLLRGGCLEMLVLRSYFAFSCDENKYMSDKFQYQPSDFLQAGCSEEFVEKYNSLH
LRMRKMKLQVEEICLLLALVLFSPDRPGLEEQAKVEEMQDMVANTLQAYEYTNKPPKEAR
VCLCWVIYR

Nucleotide sequence

Length: 387

>Cisavi.CG.ENS81.R0.1257582-1259214.14635.t
ATAGTTGATCAGATAGTTTTGCTGAGAGGAGGCTGCCTTGAGATGCTGGTACTGAGGTCA
TACTTTGCGTTCTCGTGTGATGAGAATAAGTACATGTCGGACAAGTTTCAGTACCAGCCG
AGTGATTTCCTACAAGCTGGATGCAGTGAAGAGTTTGTAGAGAAGTACAACAGTCTGCAT
CTTCGAATGAGGAAGATGAAACTGCAGGTTGAAGAAATTTGCCTTCTTCTCGCTCTTGTT
CTCTTCTCTCCTGACAGGCCAGGGCTGGAGGAACAAGCCAAAGTGGAGGAAATGCAAGAC
ATGGTGGCCAACACACTGCAAGCTTATGAGTATACAAACAAGCCACCCAAAGAGGCAAGA
GTTTGTTTATGTTGGGTGATTTATAGG

InterProScan

PRINTS
ThyrH_rcpt (IPR001728) - T[1-20] 2.5E-7 - T[66-88] 2.5E-7
SMART
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[1-129] 0.0011
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[3-121] 1.44E-33
Pfam
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[3-111] 2.7E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VDR_HUMAN 34.884 % 87.4 2.36E-21