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  1. Clone 'cien42709'
  2. Transcript 'Cisavi.CG.ENS81.R0.1...'
  3. Transcript 'Haaura.CG.MTP2014.S4...'
  4. EST 'AHC0AAA225YO24_RM1'
  5. Transcript 'Cisavi.CG.ENS81.R0.1...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R0.1645747-1662899.15373.t

Possible name(s)

DDX27; DDX46; DDX54

Location

R0 [1,645,763 / 1,662,890]

Sequences

Amino acid sequence

Length: 762

>Cisavi.CG.ENS81.R0.1645747-1662899.15373.p
TSEAELNTRKLVTQMNRKKKKSGGFQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSD
KDVVAMARTGSGKTAAFLIPMFEKLQVTQSGAGARALLLSPTRELALQTFKFVKELGKYT
SLRTACILGGDSMSEQFSAMHENPDVIIATPGRLMHVLVEMELRLSNMHYVVFDEADRLF
ELGFQEHLREILRRLPEDRQTLLFSATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKL
AFLHLREDDKLPILIHLLRNVFKETEQSVVFVPTKHHVEYVKDVLQLLGMSCSYVYSSLD
QTARKINIAKFRNKKTMVLIVTDVAARGLDIPMLDNVVNYSFPAKSKLFVHRVGRVARAG
RTGTAYSLVCQDELAYAIDLHLFLGRPLNFAKSGHTYQVWDNVYGAVSQRVVDEEQATLE
NFRKNSTLQELLKISQNAYNEPAHKQCISIPNSIYFFNVFVLIILGNSSLYESSDKSEEA
RLNLLSSVRQYKPNSTIFEIGATTKSSGAVVMKKTRKRNMKFVELHREKVKKLSEKNEQE
FSKPEINDTDEKPIEEETLKSAFTTIVRPSNKMREFSESKKKKKRRASNFKDNDFYIDYK
PKDYNTEAGLSIGESRTNFAKEASNLTLDLIGDEDKMLRQQKLQQKVWDRKKKRFVNAQD
SSGLGKKKIRTESGAVISSTYKKNIYQEWKKKTKLNDRNEDSHRSDGTSGRWQSGKRNNT
VGKQQNSKSKVKSELKRPEQILKQRKLQAQKKKNRQNRGRKQ

Nucleotide sequence

Length: 2,446

>Cisavi.CG.ENS81.R0.1645747-1662899.15373.t
AAAGTTCGCAGGAAAATTTAACATAAACATGAAAAAAGAAGACATTCCATCGGATAGCGA
GGGGGAGGTTGATTTAGATATTGAACCATCCAGTTCCACCACAAAGAAGGGCGGACAGGG
CGACATCAATGAGTTGTTGTCCATCCTGGATGATGGCTACACCTCTGAGGCGGAACTTAA
TACGAGGAAACTCGTCACTCAAATGAATCGTAAAAAAAAGAAATCTGGAGGTTTCCAGTC
AATGGGTTTATCCCATTCAGTATTCAAAGGTGTAATTCGAAAAGGTTACAAAGTGCCAAC
ACCCATTCAGAGAAAGTGTATACCTCTTATTTTGAGCGATAAAGATGTGGTAGCAATGGC
GCGGACTGGCAGTGGGAAAACTGCTGCGTTTCTTATTCCCATGTTCGAAAAGTTACAAGT
CACCCAAAGTGGAGCAGGTGCAAGGGCATTGCTGCTGTCACCTACCAGGGAGCTTGCTCT
GCAGACTTTCAAGTTTGTCAAAGAGCTTGGAAAGTACACATCCCTACGAACGGCTTGTAT
TTTGGGGGGTGACAGTATGAGCGAGCAGTTTTCTGCGATGCATGAAAATCCGGATGTAAT
TATCGCTACCCCTGGACGACTAATGCATGTGCTCGTGGAAATGGAACTGCGATTGTCCAA
TATGCACTACGTGGTGTTTGATGAAGCTGATCGGTTATTTGAGCTGGGTTTTCAAGAGCA
TCTTCGTGAAATTTTGCGCCGGTTACCTGAAGATCGTCAGACTTTGTTATTCTCTGCCAC
TCTTCCGAAACAACTAGTGGAATTCGCAAAAGCAGGTTTAAACGACCCTACACTGGTTAG
ACTCGATCTCGATTCAAAATTAAGTGATCAACTAAAGTTAGCCTTCCTCCATTTGCGGGA
AGATGACAAACTTCCAATTCTTATTCATCTTCTCCGCAATGTGTTCAAAGAAACCGAGCA
ATCAGTCGTCTTTGTACCAACCAAACATCATGTAGAATATGTCAAGGATGTATTACAACT
GCTGGGCATGAGCTGCTCTTACGTTTACAGCAGCCTCGACCAGACGGCTCGGAAAATTAA
CATTGCAAAGTTCCGGAACAAGAAGACAATGGTGTTGATTGTTACGGATGTGGCAGCGAG
AGGACTTGACATTCCGATGTTGGATAACGTGGTCAATTACTCCTTTCCTGCCAAATCTAA
ACTTTTTGTCCACAGAGTGGGCCGGGTAGCGAGAGCGGGTCGTACGGGAACTGCTTACTC
CCTCGTGTGTCAGGATGAGCTTGCTTACGCCATTGATCTACATCTTTTTCTTGGTCGACC
GTTAAACTTCGCAAAATCCGGACACACATACCAGGTTTGGGACAACGTATACGGGGCAGT
GTCGCAGAGAGTGGTGGATGAAGAACAAGCCACTCTGGAAAACTTTAGGAAAAACAGCAC
CTTGCAAGAGCTGCTTAAAATCTCCCAAAATGCGTACAATGAACCAGCACATAAACAATG
CATCTCGATTCCAAATTCTATATATTTTTTTAATGTTTTTGTTTTGATCATTCTTGGCAA
CTCTTCACTATATGAAAGTTCTGACAAATCTGAAGAGGCCAGGTTGAATTTATTGTCAAG
TGTTCGTCAATATAAACCAAATTCTACGATTTTTGAAATTGGGGCAACCACGAAAAGCTC
TGGGGCTGTTGTGATGAAGAAAACGCGGAAACGAAACATGAAGTTTGTCGAACTGCACCG
GGAAAAAGTGAAAAAACTAAGCGAGAAAAATGAACAAGAATTTTCAAAACCGGAAATTAA
CGATACCGATGAAAAACCCATTGAAGAAGAAACTTTGAAGAGCGCATTTACTACAATAGT
GCGACCTAGCAACAAAATGAGAGAATTTTCAGAGTCGAAAAAAAAGAAAAAAAGAAGAGC
TTCAAATTTTAAAGACAACGATTTTTATATTGACTACAAGCCAAAGGACTATAACACTGA
AGCTGGTTTGAGCATAGGGGAAAGTCGAACGAACTTTGCGAAAGAAGCATCCAATCTTAC
TCTGGATCTTATTGGAGATGAGGACAAAATGCTTCGGCAGCAAAAATTGCAACAAAAGGT
TTGGGATAGGAAGAAAAAGCGATTTGTAAATGCCCAGGATTCTTCGGGATTGGGAAAGAA
GAAGATCAGGACCGAAAGTGGAGCAGTCATCTCCTCCACATACAAGAAGAACATCTACCA
GGAGTGGAAGAAGAAAACGAAATTGAACGATCGGAATGAAGATTCCCATCGAAGTGATGG
CACCAGTGGAAGATGGCAATCTGGAAAAAGAAACAATACAGTTGGAAAGCAACAAAACTC
AAAATCGAAAGTTAAATCTGAACTAAAGCGACCAGAACAGATTTTAAAACAACGTAAATT
GCAAGCGCAAAAGAAGAAAAATCGACAAAATAGAGGAAGAAAACAA

InterProScan

PANTHER
DDX54/DBP10 (IPR033517) - T[3-649] 4.9E-158
ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[23-51] 9.745
SMART
Helicase_ATP-bd (IPR014001) - T[42-238] 1.4E-58
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[47-212] 1.3E-50
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[54-226] 32.697
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[93-378] 1.72E-66
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[172-180] .
CDD
Helicase_C (IPR001650) - T[247-368] 2.71326E-32
Pfam
Helicase_C (IPR001650) - T[250-360] 2.7E-22
ProSiteProfiles
Helicase_C (IPR001650) - T[253-405] 17.57
SMART
Helicase_C (IPR001650) - T[279-360] 1.0E-23
ProDom
DBP10_C (IPR012541) - T[619-718] 2.0E-14
Pfam
DBP10_C (IPR012541) - T[629-692] 8.3E-18
SMART
DBP10_C (IPR012541) - T[629-692] 1.6E-26

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX46_HUMAN 36.872 % 248 3.69E-70
DDX27_HUMAN 37.853 % 257 1.99E-74
DDX54_HUMAN 50.83 % 731 0





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