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  1. Clone 'cima879905'
  2. Transcript 'Cisavi.CG.ENS81.R1.7...'
  3. Transcript 'Cisavi.CG.ENS81.R17....'
  4. Transcript 'Cisavi.CG.ENS81.R0.1...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R0.1645747-1662899.15375.t

Possible name(s)

DDX27; DDX46; DDX54

Location

R0 [1,647,759 / 1,662,899]

Sequences

Amino acid sequence

Length: 760

>Cisavi.CG.ENS81.R0.1645747-1662899.15375.p
SEAELNTRKLVTQMNRKKKKSGGFQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDK
DVVAMARTGSGKTAAFLIPMFEKLQVTQSGAGARALLLSPTRELALQTFKFVKELGKYTS
LRTACILGGDSMSEQFSAMHENPDVIIATPGRLMHVLVEMELRLSNMHYVVFDEADRLFE
LGFQEHLREILRRLPEDRQTLLFSATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKLA
FLHLREDDKLPILIHLLRNVFKETEQSVVFVPTKHHVEYVKDVLQLLGMSCSYVYSSLDQ
TARKINIAKFRNKKTMVLIVTDVAARGLDIPMLDNVVNYSFPAKSKLFVHRVGRVARAGR
TGTAYSLVCQDELAYAIDLHLFLGRPLNFAKSGHTYQVWDNVYGAVSQRVVDEEQATLEN
FRKNSTLQELLKISQNAYNKNSFVGHPYFTNIYIQKRTFFTVYNVLVQDSDKSEEARLNL
LSSVRQYKPNSTIFEIGATTKSSGAVVMKKTRKRNMKFVELHREKVKKLSEKNEQEFSKP
EINDTDEKPIEEETLKSAFTTIVRPSNKMREFSESKKKKKRRASNFKDNDFYIDYKPKDY
NTEAGLSIGESRTNFAKEASNLTLDLIGDEDKMLRQQKLQQKVWDRKKKRFVNAQDSSGL
GKKKIRTESGAVISSTYKKNIYQEWKKKTKLNDRNEDSHRSDGTSGRWQSGKRNNTVGKQ
QNSKSKVKSELKRPEQILKQRKLQAQKKKNRQNRGRKQRR

Nucleotide sequence

Length: 2,387

>Cisavi.CG.ENS81.R0.1645747-1662899.15375.t
AGGGGGAGGTTGATTTAGATATTGAACCATCCAGTTCCACCACAAAGAAGGGCGGACAGG
GCGACATCAATGAGTTGTTGTCCATCCTGGATGATGGCTACACCTCTGAGGCGGAACTTA
ATACGAGGAAACTCGTCACTCAAATGAATCGTAAAAAAAAGAAATCTGGAGGTTTCCAGT
CAATGGGTTTATCCCATTCAGTATTCAAAGGTGTAATTCGAAAAGGTTACAAAGTGCCAA
CACCCATTCAGAGAAAGTGTATACCTCTTATTTTGAGCGATAAAGATGTGGTAGCAATGG
CGCGGACTGGCAGTGGGAAAACTGCTGCGTTTCTTATTCCCATGTTCGAAAAGTTACAAG
TCACCCAAAGTGGAGCAGGTGCAAGGGCATTGCTGCTGTCACCTACCAGGGAGCTTGCTC
TGCAGACTTTCAAGTTTGTCAAAGAGCTTGGAAAGTACACATCCCTACGAACGGCTTGTA
TTTTGGGGGGTGACAGTATGAGCGAGCAGTTTTCTGCGATGCATGAAAATCCGGATGTAA
TTATCGCTACCCCTGGACGACTAATGCATGTGCTCGTGGAAATGGAACTGCGATTGTCCA
ATATGCACTACGTGGTGTTTGATGAAGCTGATCGGTTATTTGAGCTGGGTTTTCAAGAGC
ATCTTCGTGAAATTTTGCGCCGGTTACCTGAAGATCGTCAGACTTTGTTATTCTCTGCCA
CTCTTCCGAAACAACTAGTGGAATTCGCAAAAGCAGGTTTAAACGACCCTACACTGGTTA
GACTCGATCTCGATTCAAAATTAAGTGATCAACTAAAGTTAGCCTTCCTCCATTTGCGGG
AAGATGACAAACTTCCAATTCTTATTCATCTTCTCCGCAATGTGTTCAAAGAAACCGAGC
AATCAGTCGTCTTTGTACCAACCAAACATCATGTAGAATATGTCAAGGATGTATTACAAC
TGCTGGGCATGAGCTGCTCTTACGTTTACAGCAGCCTCGACCAGACGGCTCGGAAAATTA
ACATTGCAAAGTTCCGGAACAAGAAGACAATGGTGTTGATTGTTACGGATGTGGCAGCGA
GAGGACTTGACATTCCGATGTTGGATAACGTGGTCAATTACTCCTTTCCTGCCAAATCTA
AACTTTTTGTCCACAGAGTGGGCCGGGTAGCGAGAGCGGGTCGTACGGGAACTGCTTACT
CCCTCGTGTGTCAGGATGAGCTTGCTTACGCCATTGATCTACATCTTTTTCTTGGTCGAC
CGTTAAACTTCGCAAAATCCGGACACACATACCAGGTTTGGGACAACGTATACGGGGCAG
TGTCGCAGAGAGTGGTGGATGAAGAACAAGCCACTCTGGAAAACTTTAGGAAAAACAGCA
CCTTGCAAGAGCTGCTTAAAATCTCCCAAAATGCGTACAATAAAAATAGTTTTGTTGGCC
ATCCATATTTTACCAATATATATATACAAAAAAGAACTTTTTTTACAGTTTATAATGTAC
TGGTACAAGATTCTGACAAATCTGAAGAGGCCAGGTTGAATTTATTGTCAAGTGTTCGTC
AATATAAACCAAATTCTACGATTTTTGAAATTGGGGCAACCACGAAAAGCTCTGGGGCTG
TTGTGATGAAGAAAACGCGGAAACGAAACATGAAGTTTGTCGAACTGCACCGGGAAAAAG
TGAAAAAACTAAGCGAGAAAAATGAACAAGAATTTTCAAAACCGGAAATTAACGATACCG
ATGAAAAACCCATTGAAGAAGAAACTTTGAAGAGCGCATTTACTACAATAGTGCGACCTA
GCAACAAAATGAGAGAATTTTCAGAGTCGAAAAAAAAGAAAAAAAGAAGAGCTTCAAATT
TTAAAGACAACGATTTTTATATTGACTACAAGCCAAAGGACTATAACACTGAAGCTGGTT
TGAGCATAGGGGAAAGTCGAACGAACTTTGCGAAAGAAGCATCCAATCTTACTCTGGATC
TTATTGGAGATGAGGACAAAATGCTTCGGCAGCAAAAATTGCAACAAAAGGTTTGGGATA
GGAAGAAAAAGCGATTTGTAAATGCCCAGGATTCTTCGGGATTGGGAAAGAAGAAGATCA
GGACCGAAAGTGGAGCAGTCATCTCCTCCACATACAAGAAGAACATCTACCAGGAGTGGA
AGAAGAAAACGAAATTGAACGATCGGAATGAAGATTCCCATCGAAGTGATGGCACCAGTG
GAAGATGGCAATCTGGAAAAAGAAACAATACAGTTGGAAAGCAACAAAACTCAAAATCGA
AAGTTAAATCTGAACTAAAGCGACCAGAACAGATTTTAAAACAACGTAAATTGCAAGCGC
AAAAGAAGAAAAATCGACAAAATAGAGGAAGAAAACAAAGACGTTAG

InterProScan

PANTHER
DDX54/DBP10 (IPR033517) - T[3-645] 2.0E-158
ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[22-50] 9.745
SMART
Helicase_ATP-bd (IPR014001) - T[41-237] 1.4E-58
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[46-211] 1.3E-50
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[53-225] 32.697
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[92-377] 1.71E-66
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[171-179] .
CDD
Helicase_C (IPR001650) - T[246-367] 3.58393E-32
Pfam
Helicase_C (IPR001650) - T[249-359] 2.7E-22
ProSiteProfiles
Helicase_C (IPR001650) - T[252-404] 17.57
SMART
Helicase_C (IPR001650) - T[278-359] 1.0E-23
ProDom
DBP10_C (IPR012541) - T[615-697] 4.0E-14
Pfam
DBP10_C (IPR012541) - T[625-688] 8.3E-18
SMART
DBP10_C (IPR012541) - T[625-688] 1.6E-26

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX46_HUMAN 36.872 % 249 3.23E-70
DDX27_HUMAN 37.853 % 257 1.68E-74
DDX54_HUMAN 49.681 % 712 0





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