- Region 'REG00001522' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1645747-1662899.15377.t
Possible name(s)
DDX27; DDX46; DDX54
Gene model
Location
R0 [1,648,476 / 1,652,592]
Amino acid sequence
Length: 327
>Cisavi.CG.ENS81.R0.1645747-1662899.15377.p
GLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEKLQVT
QSGAGARALLLSPTRELALQTFKFVKELGKYTSLRTACILGGDSMSEQFSAMHENPDVII
ATPGRLMHVLVEMELRLSNMHYVVFDEADRLFELGFQEHLREILRRLPEDRQTLLFSATL
PKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKVFSARFFYYYVKYFSNLNVYKDPSNFFGH
KYICNTGCKMFFFFVKQLMNNTFCSYVYSSLDQTARKINIAKFRNKKTMVLIVTDVAARG
LDIPMLDNVVNYSFPAKSKLFVHRVGK
Nucleotide sequence
Length: 981
>Cisavi.CG.ENS81.R0.1645747-1662899.15377.t
GGTTTATCCCATTCAGTATTCAAAGGTGTAATTCGAAAAGGTTACAAAGTGCCAACACCC
ATTCAGAGAAAGTGTATACCTCTTATTTTGAGCGATAAAGATGTGGTAGCAATGGCGCGG
ACTGGCAGTGGGAAAACTGCTGCGTTTCTTATTCCCATGTTCGAAAAGTTACAAGTCACC
CAAAGTGGAGCAGGTGCAAGGGCATTGCTGCTGTCACCTACCAGGGAGCTTGCTCTGCAG
ACTTTCAAGTTTGTCAAAGAGCTTGGAAAGTACACATCCCTACGAACGGCTTGTATTTTG
GGGGGTGACAGTATGAGCGAGCAGTTTTCTGCGATGCATGAAAATCCGGATGTAATTATC
GCTACCCCTGGACGACTAATGCATGTGCTCGTGGAAATGGAACTGCGATTGTCCAATATG
CACTACGTGGTGTTTGATGAAGCTGATCGGTTATTTGAGCTGGGTTTTCAAGAGCATCTT
CGTGAAATTTTGCGCCGGTTACCTGAAGATCGTCAGACTTTGTTATTCTCTGCCACTCTT
CCGAAACAACTAGTGGAATTCGCAAAAGCAGGTTTAAACGACCCTACACTGGTTAGACTC
GATCTCGATTCAAAATTAAGTGATCAACTAAAGGTATTTTCCGCTAGATTTTTTTATTAC
TATGTCAAGTATTTTTCAAATTTAAATGTATATAAAGACCCAAGCAACTTTTTTGGACAT
AAATATATATGCAACACAGGGTGCAAGATGTTTTTTTTTTTTGTGAAACAACTAATGAAC
AATACTTTCTGCTCTTACGTTTACAGCAGCCTCGACCAGACGGCTCGGAAAATTAACATT
GCAAAGTTCCGGAACAAGAAGACAATGGTGTTGATTGTTACGGATGTGGCAGCGAGAGGA
CTTGACATTCCGATGTTGGATAACGTGGTCAATTACTCCTTTCCTGCCAAATCTAAACTT
TTTGTCCACAGAGTGGGTAAG
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[1-23] 8.618 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[2-199] 8.2E-64 - T[137-327] 8.36E-32 |
| PANTHER |
DDX54/DBP10 (IPR033517) - T[2-326] 7.2E-121 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[14-213] 3.1E-60 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[19-184] 2.2E-51 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[26-198] 32.697 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[144-152] . |
| SMART |
Helicase_C (IPR001650) - T[253-327] 1.2E-7 |
| Pfam |
Helicase_C (IPR001650) - T[258-326] 1.7E-13 |
| CDD |
Helicase_C (IPR001650) - T[264-326] 1.8862E-13 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX46_HUMAN | 34.795 % | 205 | 1.59E-59 |
| DDX54_HUMAN | 61.329 % | 406 | 8.81E-136 |
| DDX42_HUMAN | 35.224 % | 194 | 8.56E-56 |