- Transcript 'KH2012:KH.C8.248.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.S1206.2.v1...' >
- Transcript 'KH2012:KH.C2.28.v2.A...' >
- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1645747-1662899.15378.t
Possible name(s)
DDX27; DDX46; DDX54
Gene model
Location
R0 [1,648,476 / 1,652,592]
Amino acid sequence
Length: 323
>Cisavi.CG.ENS81.R0.1645747-1662899.15378.p
GLSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEKLQVT
QSGAGARALLLSPTRELALQTFKFVKELGKYTSLRTACILGGDSMSEQFSAMHENPDVII
ATPGRLMHVLVEMELRLSNMHYVVFDEADRLFELGFQEHLREILRRLPEDRQTLLFSATL
PKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKTVPCSIFLKLDVIKFFLGNRNDQLFTSVR
LNCVEYLPNTQVLQLLGMSCSYVYSSLDQTARKINIAKFRNKKTMVLIVTDVAARGLDIP
MLDNVVNYSFPAKSKLFVHRVGK
Nucleotide sequence
Length: 969
>Cisavi.CG.ENS81.R0.1645747-1662899.15378.t
GGTTTATCCCATTCAGTATTCAAAGGTGTAATTCGAAAAGGTTACAAAGTGCCAACACCC
ATTCAGAGAAAGTGTATACCTCTTATTTTGAGCGATAAAGATGTGGTAGCAATGGCGCGG
ACTGGCAGTGGGAAAACTGCTGCGTTTCTTATTCCCATGTTCGAAAAGTTACAAGTCACC
CAAAGTGGAGCAGGTGCAAGGGCATTGCTGCTGTCACCTACCAGGGAGCTTGCTCTGCAG
ACTTTCAAGTTTGTCAAAGAGCTTGGAAAGTACACATCCCTACGAACGGCTTGTATTTTG
GGGGGTGACAGTATGAGCGAGCAGTTTTCTGCGATGCATGAAAATCCGGATGTAATTATC
GCTACCCCTGGACGACTAATGCATGTGCTCGTGGAAATGGAACTGCGATTGTCCAATATG
CACTACGTGGTGTTTGATGAAGCTGATCGGTTATTTGAGCTGGGTTTTCAAGAGCATCTT
CGTGAAATTTTGCGCCGGTTACCTGAAGATCGTCAGACTTTGTTATTCTCTGCCACTCTT
CCGAAACAACTAGTGGAATTCGCAAAAGCAGGTTTAAACGACCCTACACTGGTTAGACTC
GATCTCGATTCAAAATTAAGTGATCAACTAAAGACGGTCCCTTGTTCAATTTTTTTAAAA
CTTGATGTAATTAAATTCTTTTTGGGTAATAGAAACGATCAACTGTTTACCAGTGTAAGA
TTAAATTGTGTTGAATATTTACCCAACACTCAGGTATTACAACTGCTGGGCATGAGCTGC
TCTTACGTTTACAGCAGCCTCGACCAGACGGCTCGGAAAATTAACATTGCAAAGTTCCGG
AACAAGAAGACAATGGTGTTGATTGTTACGGATGTGGCAGCGAGAGGACTTGACATTCCG
ATGTTGGATAACGTGGTCAATTACTCCTTTCCTGCCAAATCTAAACTTTTTGTCCACAGA
GTGGGTAAG
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[1-23] 8.618 |
| PANTHER |
DDX54/DBP10 (IPR033517) - T[2-322] 3.0E-123 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[2-199] 7.72E-64 - T[137-323] 1.15E-31 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[14-213] 8.3E-59 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[19-184] 2.2E-51 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[26-198] 32.697 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[144-152] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[222-323] 11.002 |
| Pfam |
Helicase_C (IPR001650) - T[244-322] 1.3E-14 |
| SMART |
Helicase_C (IPR001650) - T[247-323] 4.4E-9 |
| CDD |
Helicase_C (IPR001650) - T[250-322] 1.76852E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX46_HUMAN | 36.036 % | 199 | 1.51E-57 |
| DDX54_HUMAN | 64.264 % | 418 | 1.73E-140 |
| DDX42_HUMAN | 36.728 % | 199 | 1.44E-57 |