- Transcript 'KH2012:KH.C5.23.v4.A...' >
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- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1645747-1662899.15379.t
Possible name(s)
DDX27; DDX46; DDX54
Gene model
Location
R0 [1,648,479 / 1,652,592]
Amino acid sequence
Length: 329
>Cisavi.CG.ENS81.R0.1645747-1662899.15379.p
LSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEKLQVTQ
SGAGARALLLSPTRELALQTFKFVKELGKYTSLRTACILGGDSMSEQFSAMHENPDVIIA
TPGRLMHVLVEMELRLSNMHYVVFDEADRLFELGFQEHLREILRRLPEDRQTLLFSATLP
KQLVEFAKAGLNDPTLVRLDLDSKLSDQLKVFSARFFYYSISVCELFQHCITHYNSVSVS
QSVVFVPTKHHVEYVKDVLQLLGMSCSYVYSSLDQTARKINIAKFRNKKTMVLIVTDVAA
RGLDIPMLDNVVNYSFPAKSKLFVHRVGK
Nucleotide sequence
Length: 987
>Cisavi.CG.ENS81.R0.1645747-1662899.15379.t
TTATCCCATTCAGTATTCAAAGGTGTAATTCGAAAAGGTTACAAAGTGCCAACACCCATT
CAGAGAAAGTGTATACCTCTTATTTTGAGCGATAAAGATGTGGTAGCAATGGCGCGGACT
GGCAGTGGGAAAACTGCTGCGTTTCTTATTCCCATGTTCGAAAAGTTACAAGTCACCCAA
AGTGGAGCAGGTGCAAGGGCATTGCTGCTGTCACCTACCAGGGAGCTTGCTCTGCAGACT
TTCAAGTTTGTCAAAGAGCTTGGAAAGTACACATCCCTACGAACGGCTTGTATTTTGGGG
GGTGACAGTATGAGCGAGCAGTTTTCTGCGATGCATGAAAATCCGGATGTAATTATCGCT
ACCCCTGGACGACTAATGCATGTGCTCGTGGAAATGGAACTGCGATTGTCCAATATGCAC
TACGTGGTGTTTGATGAAGCTGATCGGTTATTTGAGCTGGGTTTTCAAGAGCATCTTCGT
GAAATTTTGCGCCGGTTACCTGAAGATCGTCAGACTTTGTTATTCTCTGCCACTCTTCCG
AAACAACTAGTGGAATTCGCAAAAGCAGGTTTAAACGACCCTACACTGGTTAGACTCGAT
CTCGATTCAAAATTAAGTGATCAACTAAAGGTATTTTCCGCTAGATTTTTTTATTACTCA
ATTTCTGTTTGCGAGTTATTCCAACATTGTATAACCCATTACAATAGCGTAAGTGTTTCG
CAATCAGTCGTCTTTGTACCAACCAAACATCATGTAGAATATGTCAAGGATGTATTACAA
CTGCTGGGCATGAGCTGCTCTTACGTTTACAGCAGCCTCGACCAGACGGCTCGGAAAATT
AACATTGCAAAGTTCCGGAACAAGAAGACAATGGTGTTGATTGTTACGGATGTGGCAGCG
AGAGGACTTGACATTCCGATGTTGGATAACGTGGTCAATTACTCCTTTCCTGCCAAATCT
AAACTTTTTGTCCACAGAGTGGGTAAG
| PANTHER |
DDX54/DBP10 (IPR033517) - T[1-328] 4.9E-132 |
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[1-22] 8.17 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[2-198] 1.46E-63 - T[136-329] 1.67E-37 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[13-212] 3.1E-60 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[18-183] 2.3E-51 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[25-197] 32.697 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[143-151] . |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[225-329] 12.944 |
| Pfam |
Helicase_C (IPR001650) - T[228-328] 7.7E-18 |
| CDD |
Helicase_C (IPR001650) - T[247-328] 2.60978E-18 |
| SMART |
Helicase_C (IPR001650) - T[253-329] 1.5E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX46_HUMAN | 35.588 % | 208 | 1.77E-60 |
| DDX54_HUMAN | 64.438 % | 437 | 1.31E-147 |
| DDX42_HUMAN | 36 % | 204 | 3.57E-59 |