- Transcript 'Cisavi.CG.ENS81.R0.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R0.1706014-1723939.15667.t
Possible name(s)
NOTCH1; NOTCH2; NOTCH3
Gene model
Location
R0 [1,706,013 / 1,717,150]
Amino acid sequence
Length: 305
>Cisavi.CG.ENS81.R0.1706014-1723939.15667.p
GACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNC
DSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNS
YTCTCTAGWQGTNCDQDINECSATNNCAVCQNLVPSYFCVCEISSYEGILCTWAVIGTTT
YRVPATTTTTSRIAAIAICAGLDEGGGFLGEPLAANLPTILTKVVARSTFVSGFMWLNVV
RQSGSTWVYGATGTVATTNFEFEANVLDNCAVMRVSDFKWIIVSCTSFTADILCQRAITG
KVVSP
Nucleotide sequence
Length: 1,062
>Cisavi.CG.ENS81.R0.1706014-1723939.15667.t
ATGGGGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGG
GAACCAACTGTGATTCAAATATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTT
GCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACT
GTGATTCAAATATAGACGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATG
GTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCAA
ATATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAACT
CGTATACCTGCACTTGTACTGCTGGATGGCAGGGAACCAACTGTGATCAAGATATTAATG
AATGTTCCGCGACAAATAATTGTGCCGTTTGCCAAAATTTGGTTCCTTCGTATTTCTGTG
TCTGTGAAATATCAAGCTACGAAGGAATTTTATGCACATGGGCGGTTATCGGTACAACGA
CATATCGGGTGCCTGCCACCACCACTACCACCAGCCGAATCGCTGCAATCGCTATTTGTG
CTGGTCTTGATGAAGGGGGTGGTTTCTTAGGTGAACCCCTTGCTGCCAACTTGCCAACTA
TTCTCACAAAAGTTGTCGCCAGAAGCACATTTGTGTCTGGTTTCATGTGGCTTAATGTGG
TTCGACAATCAGGATCAACATGGGTGTATGGAGCAACCGGTACTGTCGCTACCACCAACT
TTGAATTTGAGGCGAATGTGTTGGACAACTGTGCAGTGATGAGAGTCAGTGATTTCAAAT
GGATCATTGTATCTTGCACCAGCTTCACCGCAGATATTTTGTGCCAACGCGCAATTACCG
GCAAAGTAGTGTCTCCTTAAACGTATTAAATTTTCTATTTTTATTTATTTCGTTTTGCAA
CTGTTGCCCATACTCGACTGCCAATTGTGAATATTATGTTTTTTTTTATTTGCGTGAACA
GAATTTTAAACATAATAAAAATATGATCGAGTGTCAAACATA
| SMART |
EGF-like_dom (IPR000742) - T[1-24] 72.0 - T[29-61] 1.2E-5 - T[66-98] 1.2E-5 - T[103-135] 1.2E-5 - T[140-172] 23.0 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[1-24] 13.121 - T[26-61] 18.666 - T[63-98] 18.666 - T[100-135] 18.666 - T[137-172] 10.51 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[1-24] 0.12 - T[26-61] 1.0E-9 - T[63-98] 1.0E-9 - T[100-135] 1.0E-9 - T[137-172] 0.0071 |
| Pfam |
EGF-like_CS (IPR013032) - T[1-18] 6.8E-4 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[3-14] . - T[40-51] . - T[77-88] . - T[114-125] . - T[150-161] . |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[3-104] 1.41E-9 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[12-23] . - T[12-23] . - T[49-60] . - T[49-60] . - T[86-97] . - T[86-97] . - T[123-134] . - T[123-134] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[26-49] . - T[100-123] . |
| Pfam |
EGF-like_dom (IPR000742) - T[30-58] 2.1E-5 - T[67-95] 2.1E-5 - T[104-132] 2.1E-5 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[187-298] 6.39E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NOTC3_HUMAN | 42.458 % | 154 | 5.46E-42 |
| NOTC2_HUMAN | 45.294 % | 157 | 7.66E-43 |
| NOTC1_HUMAN | 45.455 % | 156 | 1.11E-42 |