Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 735

>Cisavi.CG.ENS81.R0.1706014-1723939.15671.p
MPGFNGNNCQTNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVN
GACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNC
DSAITNCAGNPCVNGACTDGVNSYTCTCTAGWQGTNCDSNINDCAANPCVNGACTDGVNS
YTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNCDSNIDDCAA
NPCVNGACTDGVNSYTCTCTAGWQGTNCDSNINDCSGNPCVNGACTDGVNSYTCTCTAGW
QGTNCDSNIDDCAANPCMNGACTDGVNSYTCTCTAGWQGTNCDSNINDCSANPCVNGACT
DGVNSYTCTCTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTRLQFDI
DDCAANPCVNGACTDGVNSYTCTCTAGWQGTNCDSNIDDCSGNPCVNGACTDGVNSYTCT
CTAGWQGTNCDSNIDDCAANPCVNGACTDGVNSYTCTCTAGWQGTNCDSNIDDCAANPCV
NGACTDGVNSYTCTCTAGWQGTNCDQDINECSATNNCAVCQNLVPSYFCVCEISSYEGIL
CTWAVIGTTTYRVPATTTTTSRIAAIAICAGLDEGGGFLGEPLAANLPTILTKVVARSTF
VSGFMWLNVVRQSGSTWVYGATGTVATTNFEFEANVLDNCAVMRVSDFKWIIVSCTSFTA
DILCQRAITGKVVSP

Nucleotide sequence

Length: 2,398

>Cisavi.CG.ENS81.R0.1706014-1723939.15671.t
TGTGATAATTGTTCCACAGCGTGTGATAGCAAACCGTGTCTCAACAATGGGGTGTGCACC
AACGTGCTATCATCTTACACCTGCTCTTGTATGCCAGGATTCAATGGAAACAATTGCCAA
ACAAATATTGATGATTGTGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTT
AACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCAAATATT
GACGATTGTGCTGCTAATCCTTGTGTGAATGGGGCTTGCACTGATGGTGTTAACTCGTAT
ACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCAAATATAGATGATTGT
GCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAACTCGTATACCTGCACC
TGTACTGCTGGATGGCAGGGAACCAACTGTGATTCTGCTATAACCAATTGTGCTGGTAAT
CCTTGTGTGAACGGGGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCT
GGATGGCAGGGAACCAACTGTGATTCAAATATAAATGATTGTGCTGCTAATCCTTGTGTG
AATGGAGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAG
GGTACCAACTGTGATTCAAATATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCT
TGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAAC
TGTGATTCAAATATAGACGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGAT
GGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCA
AACATAAACGATTGTTCTGGTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAAC
TCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCAAATATAGAT
GATTGTGCTGCTAATCCTTGTATGAATGGAGCTTGCACTGATGGTGTTAACTCGTATACC
TGCACCTGTACTGCTGGATGGCAGGGAACCAACTGTGATTCAAACATAAACGACTGTTCT
GCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGT
ACTGCTGGATGGCAGGGAACCAACTGTGATTCAAATATAGACGATTGTGCTGCTAATCCT
TGTGTGAATGGAGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGA
TGGCAGGGAACCAGACTGCAATTTGATATTGACGATTGTGCTGCTAATCCTTGTGTGAAT
GGAGCTTGCACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGA
ACCAACTGTGATTCAAATATAGATGATTGTTCTGGTAATCCTTGTGTGAATGGAGCTTGC
ACTGATGGTGTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGAACCAACTGT
GATTCAAATATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGT
GTTAACTCGTATACCTGCACCTGTACTGCTGGATGGCAGGGTACCAACTGTGATTCAAAT
ATAGATGATTGCGCTGCTAATCCTTGTGTGAATGGAGCTTGCACTGATGGTGTTAACTCG
TATACCTGCACTTGTACTGCTGGATGGCAGGGAACCAACTGTGATCAAGATATTAATGAA
TGTTCCGCGACAAATAATTGTGCCGTTTGCCAAAATTTGGTTCCTTCGTATTTCTGTGTC
TGTGAAATATCAAGCTACGAAGGAATTTTATGCACATGGGCGGTTATCGGTACAACGACA
TATCGGGTGCCTGCCACCACCACTACCACCAGCCGAATCGCTGCAATCGCTATTTGTGCT
GGTCTTGATGAAGGGGGTGGTTTCTTAGGTGAACCCCTTGCTGCCAACTTGCCAACTATT
CTCACAAAAGTTGTCGCCAGAAGCACATTTGTGTCTGGTTTCATGTGGCTTAATGTGGTT
CGACAATCAGGATCAACATGGGTGTATGGAGCAACCGGTACTGTCGCTACCACCAACTTT
GAATTTGAGGCGAATGTGTTGGACAACTGTGCAGTGATGAGAGTCAGTGATTTCAAATGG
ATCATTGTATCTTGCACCAGCTTCACCGCAGATATTTTGTGCCAACGCGCAATTACCGGC
AAAGTAGTGTCTCCTTAAACGTATTAAATTTTCTATTTTTATTTATTTCGTTTTGCAACT
GTTGCCCATACTCGACTGCCAATTGTGAATATTATGTTTTTTTTTATTTGCGTGAACA

InterProScan

ProSiteProfiles	EGF-like_dom (IPR000742) - T[1-10] 6.803 - T[12-47] 18.666 - T[49-84] 18.666 - T[86-121] 18.666 - T[123-158] 15.628 - T[160-195] 18.253 - T[197-232] 18.666 - T[234-269] 18.666 - T[271-306] 18.255 - T[308-343] 18.989 - T[345-380] 18.255 - T[382-417] 15.296 - T[419-454] 18.745 - T[456-491] 18.669 - T[493-528] 18.666 - T[530-565] 18.666 - T[567-602] 10.51
SUPERFAMILY	Growth_fac_rcpt_cys_sf (IPR009030) - T[2-127] 1.73E-10 - T[184-312] 6.28E-11 - T[369-497] 3.66E-11
ProSitePatterns	EGF_Ca-bd_CS (IPR018097) - T[5-35] . - T[49-72] . - T[197-220] . - T[308-331] . - T[493-516] .
SMART	EGF-like_Ca-bd_dom (IPR001881) - T[12-47] 1.0E-9 - T[49-84] 1.0E-9 - T[86-121] 1.0E-9 - T[127-158] 0.0012 - T[160-195] 1.6E-9 - T[197-232] 1.0E-9 - T[234-269] 1.0E-9 - T[271-306] 5.0E-9 - T[308-343] 3.6E-10 - T[345-380] 2.1E-9 - T[382-418] 2.8E-7 - T[419-454] 1.7E-10 - T[456-491] 3.2E-9 - T[493-528] 1.0E-9 - T[530-565] 1.0E-9 - T[567-602] 0.0071
SMART	EGF-like_dom (IPR000742) - T[15-47] 1.2E-5 - T[52-84] 1.2E-5 - T[89-121] 1.2E-5 - T[126-158] 5.0E-5 - T[163-195] 1.2E-5 - T[200-232] 1.2E-5 - T[237-269] 1.2E-5 - T[274-306] 3.5E-5 - T[311-343] 4.4E-6 - T[348-380] 2.1E-5 - T[385-419] 0.0013 - T[422-454] 1.2E-5 - T[459-491] 3.5E-5 - T[496-528] 1.2E-5 - T[533-565] 1.2E-5 - T[570-602] 23.0
Pfam	EGF-like_dom (IPR000742) - T[16-44] 6.4E-5 - T[53-81] 6.4E-5 - T[90-118] 6.4E-5 - T[164-192] 6.4E-5 - T[201-229] 6.4E-5 - T[238-266] 6.4E-5 - T[312-340] 2.1E-6 - T[349-377] 5.4E-5 - T[386-415] 2.5E-5 - T[423-451] 6.4E-5 - T[497-525] 6.4E-5 - T[534-562] 6.4E-5
ProSitePatterns	EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[26-37] . - T[63-74] . - T[100-111] . - T[137-148] . - T[174-185] . - T[211-222] . - T[248-259] . - T[285-296] . - T[322-333] . - T[359-370] . - T[396-407] . - T[433-444] . - T[470-481] . - T[507-518] . - T[544-555] . - T[580-591] .
ProSitePatterns	EGF-like_CS (IPR013032) - T[35-46] . - T[35-46] . - T[72-83] . - T[72-83] . - T[109-120] . - T[109-120] . - T[146-157] . - T[146-157] . - T[183-194] . - T[183-194] . - T[220-231] . - T[220-231] . - T[257-268] . - T[257-268] . - T[294-305] . - T[294-305] . - T[331-342] . - T[331-342] . - T[368-379] . - T[368-379] . - T[442-453] . - T[442-453] . - T[479-490] . - T[479-490] . - T[516-527] . - T[516-527] . - T[553-564] . - T[553-564] .
Pfam	EGF-like_CS (IPR013032) - T[132-152] 1.2E-4 - T[280-300] 1.2E-4 - T[465-485] 1.2E-4
SUPERFAMILY	CTDL_fold (IPR016187) - T[617-728] 4.29E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NOTC3_HUMAN	37.143 %	447	1.12E-137
NOTC2_HUMAN	40.653 %	502	1.95E-156
NOTC1_HUMAN	41.321 %	486	8.8E-151

Transcript Model

Transcript Id

Possible name(s)

Gene model

Location

Amino acid sequence

Nucleotide sequence