Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R0.1788070-1792968.15755.t

Possible name(s)

RAB1A; RAB1B; RAB8B

Gene model

Cisavi.CG.ENS81.R0.1788070-1792968

Location

R0 [1,788,069 / 1,792,968]

Sequences

Amino acid sequence

Length: 204

>Cisavi.CG.ENS81.R0.1788070-1792968.15755.p
MTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK
LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL
VGNKCDLTTKKVVDYTTAKEYADTLKIPFLETSAKTANNVEQAFMTMAAEIKNRMGPGTA
ASPGQSNKVDISSKPVDGKQGGCC

Nucleotide sequence

Length: 1,303

>Cisavi.CG.ENS81.R0.1788070-1792968.15755.t
CACAGAGATATAGTAAGAGAAGGTATTACATACGAATATTTCCTCTACACAACACCTGAT
TATAACCAGCAAACAAGAGGACATAGATATCATAAGAAGATCGGGCCATGACCATGAACC
CTGAATATGACTACTTATTCAAGCTTCTACTGATCGGAGATTCTGGGGTTGGAAAGTCCT
GTCTGTTGCTCAGATTCGCTGATGACACTTATACCGAGAGCTACATCAGCACCATTGGAG
TAGACTTTAAAATCCGCACAATAGAATTAGATGGAAAAACTATAAAACTGCAAATTTGGG
ACACAGCTGGACAAGAACGGTTTCGTACGATCACATCAAGTTACTACCGAGGCGCTCACG
GCATAATTGTTGTCTATGATGTCACAGACCAGGAATCGTTTAACAACGTTAAGCAATGGC
TTCAAGAAATTGACCGATATGCAAGCGAGAATGTTAACAAATTGCTTGTGGGTAACAAAT
GTGATTTGACCACAAAGAAAGTTGTTGATTACACGACTGCTAAGGAATATGCCGACACGC
TCAAGATTCCTTTCCTTGAAACGAGTGCAAAGACCGCGAATAATGTCGAACAAGCGTTTA
TGACAATGGCTGCCGAGATAAAGAATCGAATGGGTCCCGGCACGGCTGCTTCCCCAGGAC
AAAGCAACAAAGTGGATATATCAAGCAAACCGGTGGATGGGAAGCAGGGGGGCTGCTGCT
AACTTCTTCTCCACTTTTTTCCGTTGCATTTATTCGTGATTGGTCGATTTGATGACATGA
CCAATGATTGCCGAGGAAAACACCGTGTATTATATCGACTACTAATTACCTGGCTCAGTA
ATCAACATAGGACCTTCTGCTATTAAGAATATATATCTTATTTATTGTTACTATTAGTTT
TCACATTGTTGCGCTTGACATATAGTCAAATTCTTTCATGGTGGTTTTACTGTTAATTTG
CTTAGTCTAATGCACATTATGCTTCTGTGTACAGTCCAGATGATCCTACCATTGATAACA
CACGTCAAACTAGTATTAAGTCCACTTGGTTTAGTCGCAAATCTGGGCATTTGGTTAATT
GAAAAAAACTTATTGTTGTGTATTGTACATTTTATGCTTTGTATGTTTCTAGATGAATAC
TTCAGTGAATTTTTCAATTGAAAGATTTTATCCTTTGCTTGATTGGATCCGCAATGCATC
CAGTAGAGCCATATGTGATGTGTCCCCATAACCCCAATTATTCCTAATCCGTGTTGATCA
TCGGAAGCAAACCACGTGAAAATAAAACTGAACTGAAATTGCA

InterProScan

SUPERFAMILY	P-loop_NTPase (IPR027417) - T[6-188] 6.33E-68
TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[9-167] 6.6E-36
Pfam	Small_GTPase (IPR001806) - T[12-172] 2.7E-67

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAB1A_HUMAN	88.177 %	374	4.6E-134
RAB1B_HUMAN	88.119 %	360	9.53E-129
RAB1C_HUMAN	83.663 %	339	1.56E-120