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- Transcript 'Cisavi.CG.ENS81.R107...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R107.21052-26102.02017.t
Possible name(s)
LRFN5; SLIT1; SLIT3
Gene model
Location
R107 [21,051 / 26,102]
Amino acid sequence
Length: 435
>Cisavi.CG.ENS81.R107.21052-26102.02017.p
MLFIPVIYASSSNSPQSCHPRCQCLQGVRVNCTAAGFVTLDPDIPRTFRDYEFDQNKLTA
LDKTTFSGLTSAAHLRVDRNQITVVSARAFNHNPLLSQLFLDYNQITTLPPTLFSNNREL
TIFSAKNNNITSISGTLFKHCPKLRFIGLSDNHISTIAPKAFLSNLQLTRLYLDNNRLTT
PLWKWIGHFNHSGNSFELYMEGNPWSCDCLMSDFLLKEVSSSWFRVAERNRVGRVSKIQC
DYPYHGQYVESVDSHRLVCVPPTIHSNTSVVLVEGKPGVVTCTADGTPKPLVWFTDETGR
NVTKPQRGNTSMTFTSVIPDEAGRYKCVASGMSQQKVRVQEIQTVTIVVKSKPSTGIVVF
LVLLLVAIVFGGVFMYFRHWKSRRAGYGSLSDDTPTHYDITDESNVTQATRLTEDSEDEM
VSYERDTTDEREVLV
Nucleotide sequence
Length: 1,777
>Cisavi.CG.ENS81.R107.21052-26102.02017.t
CTTTTTAAGATATGTATGTTATTTATCCCCGTAATATATGCCTCAAGCAGTAACTCGCCT
CAATCATGCCATCCCCGCTGCCAGTGCTTACAAGGTGTGAGAGTCAATTGTACCGCTGCA
GGTTTCGTGACCTTAGATCCCGACATACCAAGGACATTTCGGGATTACGAATTCGACCAA
AATAAACTCACTGCTCTGGACAAAACTACGTTTAGCGGTCTCACCAGTGCTGCTCATTTG
CGAGTTGACCGAAACCAAATAACGGTTGTTAGTGCAAGAGCGTTCAACCACAATCCATTA
CTGTCACAGTTGTTCTTAGACTATAACCAGATCACTACTTTGCCACCTACGCTTTTCAGT
AATAATCGTGAACTTACCATTTTCTCGGCGAAGAACAACAATATAACGTCTATCAGCGGG
ACGTTATTCAAGCATTGCCCTAAACTACGCTTTATTGGTTTGTCAGATAATCACATTTCG
ACAATTGCACCAAAAGCGTTTCTGAGCAACCTTCAACTAACTAGGCTGTACTTGGATAAC
AACCGCCTGACTACGCCACTATGGAAATGGATCGGACATTTCAATCATTCTGGTAACAGT
TTTGAGTTGTACATGGAGGGTAACCCGTGGTCATGTGATTGCCTTATGAGCGATTTCCTC
TTGAAAGAAGTGTCCAGCAGCTGGTTTAGAGTTGCTGAAAGAAATAGAGTCGGTAGAGTA
TCGAAAATCCAATGCGACTATCCTTACCACGGCCAATATGTCGAGTCAGTGGATTCACAT
AGATTGGTATGCGTACCACCAACCATTCATTCAAACACAAGTGTAGTTCTGGTGGAAGGT
AAACCTGGTGTAGTTACATGCACAGCTGACGGCACGCCCAAACCGCTGGTCTGGTTTACC
GACGAAACTGGCAGGAATGTTACAAAACCTCAACGAGGCAATACGAGCATGACATTCACT
TCAGTTATACCTGACGAGGCTGGCCGGTATAAATGCGTTGCATCAGGGATGAGTCAGCAA
AAAGTGCGAGTGCAGGAAATTCAAACTGTCACAATTGTAGTGAAATCCAAACCATCAACA
GGAATCGTTGTGTTCCTCGTATTACTTCTGGTAGCAATCGTATTTGGCGGAGTATTCATG
TATTTCCGACACTGGAAGAGTCGACGTGCCGGATACGGTTCATTGTCCGACGACACTCCG
ACGCATTATGACATCACGGACGAATCGAACGTTACGCAGGCGACGCGATTGACCGAGGAC
TCGGAAGATGAGATGGTCAGCTATGAACGAGATACAACCGACGAACGGGAAGTCTTGGTT
TAGCGGACGTTGACAGTATATTGGTTGCAGTGTAATGGCATTTACTGTAGTATAATAACA
TTGACTGTAGTATAATGGCATTGACTGTAGTATAATGGCATTGGTTGCCATATAATGACA
TTGACTGCAGTTTATAGTGGTATTGGTTGCAGCATAATGACATTTCATAAGCCTTTTTTT
TTAAATTCGCCTTTACATAAGCCTTTTTTTCAATATCGCCTTTATATAAGCCTTTTTTGT
TATACCTGACATGGTTTCGAGTGCATGACATGCTCGTCACTTAGAACGTTTCTGTATAGA
GTTGGTGTATGTATCGGTCGCTTTAACCGTTCGGCCGCACAACCTTTAGAGCACGACCCC
GCAACGAAATATGCAAGTTCGCACTATGGGCTTTTTACTATTGCGCACTTACTGTATTAT
TACCGTTGCACCTTTTGTAAATAAAACTTTCCTTTAT
| Gene3D |
LRR_dom_sf (IPR032675) - T[17-118] 1.7E-19 - T[119-263] 7.7E-27 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[69-92] 25.0 - T[94-116] 1.8 - T[141-164] 22.0 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[95-116] 6.634 - T[119-140] 5.579 - T[143-164] 7.596 - T[167-180] 4.986 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[95-154] 9.0E-12 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[261-338] 10.825 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[261-332] 3.3E-10 |
| Gene3D |
Ig-like_fold (IPR013783) - T[264-356] 2.9E-9 |
| SMART |
Ig_sub (IPR003599) - T[267-350] 1.6E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SLIT1_HUMAN | 28.315 % | 95.1 | 8.84E-21 |
| SLIT3_HUMAN | 28.958 % | 95.9 | 5.23E-21 |
| LRFN5_HUMAN | 24.868 % | 99.4 | 3.15E-22 |