Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R107.89431-101059.02588.t

Possible name(s)

COPS2; PSMD11

Gene model

Cisavi.CG.ENS81.R107.89431-101059

Location

R107 [89,430 / 101,059]

Sequences

Amino acid sequence

Length: 420

>Cisavi.CG.ENS81.R107.89431-101059.02588.p
MAAAMEFDRAQSLSLSDQASAISAYKDILNRDIKSTDEEGLKLKEQSILKLGTLLQQQGH
AEELGSLVKGVRPFLKSISKAKAAKLVRTLVDLFLDMEASTGLEVQLCLECIEWAKEEKR
TFLRQALEARLVALYFDTGRYQDALKSGSLLLRELKKLDDKQLLVEVQVTESRTYHALGN
LQKAKAALTSARTTANSMYCPPKMQAALDRQSGILNAAEEKDWKTAYSYFYEAFEGYDSI
ESNKAVSSLKYMLLCKIMLNQPDDVQSLLSGKLALKYAGRDIIAMRSVAKASHNRSISEL
QEILTQFEEELKADVIIGAHFDKLYDNLLEQNLLRVIEPFAKVQVSHIARLIDLPLTTVE
KKLSQMILDKKFHGILSQGEGVLILFDESTADKTYETALEVISSMSLVVDSLYQKAKRLT

Nucleotide sequence

Length: 1,837

>Cisavi.CG.ENS81.R107.89431-101059.02588.t
TGTTAAATTTCTCATCGATTACCGATTAGTTGGTTTTCATGTGGTATTTGTCTATGTTGG
ATCTTTATAGTGAATTTGCAATTTTCGAATAAAGACGAAAAGAAGTGAAGCACTGTTTTA
TACGAACGAATACTGATTGCCTTTAATACGTGTAAGAAAACCGTAGGATTTATTACGTTG
AGTTTGTTTGGATGATGATCTGACGATGGCTGCAGCTATGGAATTCGACAGAGCTCAATC
TTTAAGCTTGAGCGATCAGGCTTCGGCTATAAGCGCTTACAAAGACATACTGAACCGGGA
TATTAAAAGCACTGATGAAGAAGGTTTAAAGTTGAAGGAACAAAGTATTTTAAAGCTTGG
AACTTTACTACAACAACAAGGCCATGCTGAAGAACTTGGATCTCTGGTTAAAGGCGTACG
TCCGTTTCTTAAATCAATCAGCAAAGCAAAGGCAGCAAAACTTGTTCGCACTCTTGTTGA
TCTGTTTCTTGATATGGAAGCCAGCACTGGCCTTGAAGTCCAACTGTGCCTTGAATGCAT
AGAATGGGCCAAAGAAGAAAAGCGAACGTTTTTGCGACAAGCTTTGGAAGCCCGGCTTGT
TGCTTTGTACTTTGATACCGGCAGGTACCAAGATGCACTGAAGTCTGGATCGCTGCTTCT
GAGGGAGCTGAAGAAATTGGACGACAAGCAATTGCTTGTTGAAGTGCAAGTGACAGAGTC
CCGGACCTACCATGCACTGGGAAACCTTCAGAAAGCGAAGGCCGCCCTCACATCAGCACG
TACGACAGCGAACTCCATGTACTGCCCACCCAAGATGCAAGCTGCTCTCGACCGACAGTC
CGGCATCCTTAATGCTGCGGAAGAGAAAGATTGGAAAACCGCTTATTCCTACTTCTACGA
AGCTTTTGAAGGATACGACTCGATTGAAAGCAACAAGGCGGTTTCCTCGCTCAAGTACAT
GCTGCTGTGCAAGATCATGCTGAACCAGCCTGATGACGTCCAGTCACTTCTCAGTGGTAA
ACTTGCGCTAAAATACGCAGGCAGAGACATAATTGCAATGAGAAGTGTGGCAAAGGCAAG
CCACAATCGATCTATCTCAGAACTACAAGAGATTTTAACTCAATTTGAAGAAGAATTAAA
AGCGGACGTGATAATTGGAGCCCATTTCGACAAGCTCTATGATAATCTCCTGGAGCAAAA
CCTTCTTCGAGTGATTGAACCTTTCGCAAAAGTCCAAGTGTCGCACATTGCCCGATTAAT
AGACCTTCCATTAACAACTGTTGAAAAAAAGTTATCCCAGATGATTTTGGACAAGAAATT
CCATGGAATTTTATCCCAAGGGGAGGGGGTGCTGATTTTATTTGATGAATCTACTGCAGA
CAAAACCTACGAGACTGCACTCGAAGTGATCAGCAGTATGTCCTTAGTTGTGGACTCGCT
GTATCAGAAGGCCAAGCGGCTGACATAAACACTAACAAGCAAAACATTTAAATTTCTTCT
TTCTAGTTTGAGGTTACTACTATATATAGATGCTGCAAGGATTTTTGTGTGTTTGTATTT
GGTTTCTCTTAAAATTCAAGTTCACGCTGTTTCTTTGAAGCAAAAAAATTACCTTCTTTG
CATTAAGAAAAAATGAAATATTACCCTCGATCTGTTCGAATGTTTAAAAAAATCCTGATT
GTACAAACGCACAGCTGATTTTCTCATACGACCACACAAGTGAATAGGTCTACAGAATGA
AACAAGCTTTGTACATTCGCAAAAACATAGTTGGTGTTTGGCGTTCCAAAAGACACTAGC
AGGGTAAACCTGCTTGGTAGTCTATGTTCAACGGATT

InterProScan

PANTHER	PSMD11 (IPR035295) - T[2-420] 4.2E-202
SUPERFAMILY	TPR-like_helical_dom_sf (IPR011990) - T[106-313] 9.87E-5
Pfam	PCI_dom (IPR000717) - T[284-385] 4.9E-17
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[314-395] 8.7E-16
SMART	PCI_dom (IPR000717) - T[319-402] 5.7E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PSD11_HUMAN	70.644 %	610	0
CSN2_HUMAN	26.667 %	85.9	3.07E-18