- Transcript 'KH2012:KH.C1.250.v3....' >
- Region 'REG00000412' >
- Transcript 'KH2012:KH.C4.760.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R1.2...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R1.2477029-2488559.17167.t
Possible name(s)
RORA; RORB; RORC
Gene model
Location
R1 [2,477,028 / 2,485,202]
Amino acid sequence
Length: 784
>Cisavi.CG.ENS81.R1.2477029-2488559.17167.p
MKMNNVEYSERHQSSREMLHCADYGEVRALSPVIAPHNPHVPVQHFMGFQEHPSQHQSRD
LLHSAPYPIAFANSQRPPSSFVPLGESEPSELCSPSVNGRTYNANTVSFHGYSHHPGSPS
VPTPLETGWPDNSPNGRAPTFEELRWRDAYRNIPARAQIEIIPCKVCGDKSSGIHYGVIT
CEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRAGMSKDAVKFGRMS
KKQRDRLYLEVLKQQQLRSGQPQPESEAFNQTKHSAVTHSPPTETNVTSYFTTAEQRNDV
MVKLEPSNENTFNPNHDPLTPPTVQPVPMESKAAEYSATKNHYYDVPTSSTEPQTNPMPN
YDIAENLMNNICEAYYKTCQYSLDELAKYSKAIRSQEGILQFQNMAPDQLWSFCAEKITE
AIQHVVEFAKHSHAFMSLDQHDQIILLKTGCLEVVMVRMARAFNPSNQTVLFDEKYTHIE
TFRGLGCDDLINGMFEMAKSIAELNLTEDQIALFSFAVLITGDRPGLRESTRLNKLQSVV
LGSLQEMFLKTHSNPQNILTKLVMSMLNLRNLSRLHSKYFLQYKHQFGNILLPPLYKELF
CVDDFQSQQYFPAEPGFDQVQRRTSVCYEGQDIGYIDGSTVGTTELASNGSSGSCAIDGR
CAMIPGPAFAPCTSRSSSTSSVSSSGTAPLGNLSCDDISPMLSDNKSVPGGEQLGLDHIN
HTEEQIQRNQLVEAERLMEAALHEHTPLSNPTGYPVQLTMLAHSQQHLHGHDNNSLGGIP
HLSI
Nucleotide sequence
Length: 2,431
>Cisavi.CG.ENS81.R1.2477029-2488559.17167.t
TAAGCGATCTGGTATAGGCATGGTAAATTGTGGTTCGTACACTAACGACGAATAAATTCT
TTAACTTTTGGTCCAAATGAAGATGAACAACGTGGAATACTCCGAACGGCATCAATCGTC
AAGAGAGATGCTTCACTGTGCAGATTATGGCGAAGTTCGGGCGTTGAGCCCAGTCATCGC
TCCACATAACCCTCATGTCCCTGTCCAGCATTTTATGGGGTTCCAAGAACACCCAAGTCA
GCACCAAAGTCGTGACCTTCTCCATTCCGCCCCATACCCAATTGCGTTCGCCAATTCTCA
AAGACCGCCAAGTTCGTTCGTGCCGCTTGGCGAGAGCGAGCCATCCGAACTTTGCAGCCC
GTCAGTAAACGGACGAACGTACAACGCCAACACAGTCTCATTCCACGGTTACAGCCATCA
CCCTGGAAGTCCAAGTGTACCCACGCCCCTTGAAACCGGCTGGCCCGACAACTCTCCCAA
CGGCAGAGCCCCGACCTTCGAGGAACTCCGTTGGCGCGACGCCTACAGGAATATTCCTGC
TCGTGCCCAAATCGAGATCATACCTTGTAAAGTGTGCGGAGACAAGTCGTCAGGAATTCA
CTACGGGGTTATAACATGCGAAGGCTGCAAGGGTTTCTTTCGTCGAAGCCAGCAGAATAA
CTACGCATACTCGTGTCCAAGGCATGGGAACTGTATTATAGACCGAAGCAATAGAAATCG
TTGTCAACATTGTCGATTGCAAAAATGTCTCAGAGCTGGCATGTCCAAAGACGCTGTGAA
ATTCGGTCGGATGTCGAAAAAGCAACGGGACCGACTCTACCTTGAAGTGTTGAAGCAGCA
GCAACTGCGATCCGGCCAACCACAACCCGAGAGCGAAGCGTTTAACCAAACAAAGCACAG
TGCGGTTACCCATAGCCCCCCGACTGAGACGAATGTGACGTCATACTTTACAACAGCGGA
ACAACGCAATGACGTCATGGTGAAACTTGAGCCGTCCAACGAGAATACCTTTAACCCGAA
CCACGACCCTTTGACGCCTCCTACCGTCCAACCCGTGCCCATGGAAAGCAAAGCGGCCGA
ATACTCCGCAACTAAAAACCATTATTACGATGTCCCGACGTCCTCGACCGAACCGCAAAC
AAACCCGATGCCCAACTACGACATAGCAGAAAACCTGATGAACAACATATGCGAGGCTTA
CTACAAAACCTGTCAGTACTCGCTGGATGAACTCGCCAAATATTCTAAAGCGATTCGTTC
GCAAGAAGGCATTCTGCAGTTCCAGAACATGGCTCCGGATCAACTTTGGAGTTTCTGTGC
TGAGAAAATAACGGAGGCAATCCAACATGTTGTGGAGTTTGCTAAGCATTCACACGCATT
CATGTCGCTCGACCAACACGACCAGATCATACTACTGAAAACAGGTTGCTTGGAAGTGGT
GATGGTACGAATGGCTCGTGCGTTCAACCCGTCCAACCAAACCGTTCTATTCGACGAGAA
GTACACTCACATTGAAACGTTTAGGGGACTTGGCTGCGACGATTTGATCAACGGAATGTT
CGAAATGGCAAAGTCGATTGCCGAGCTGAATCTGACCGAGGACCAGATTGCTCTCTTCTC
GTTTGCCGTGCTCATCACTGGAGACCGGCCAGGTTTGCGCGAATCAACTCGCCTGAACAA
GCTACAGTCTGTCGTGCTTGGCTCACTACAAGAAATGTTCCTCAAAACACACAGCAACCC
GCAGAACATATTGACAAAGTTGGTCATGAGCATGCTGAATCTTCGCAATCTCAGCCGTCT
GCACTCCAAGTATTTCCTTCAGTACAAGCACCAGTTCGGCAATATATTGCTCCCGCCTCT
GTACAAAGAGCTTTTCTGCGTCGACGATTTTCAGAGTCAGCAGTATTTCCCGGCCGAGCC
CGGCTTTGACCAAGTACAACGACGCACCAGCGTATGCTACGAAGGCCAAGATATCGGTTA
TATTGACGGCTCTACTGTCGGCACGACCGAGCTCGCTTCGAACGGTAGCTCGGGTTCGTG
CGCGATTGACGGCCGCTGCGCGATGATTCCAGGTCCTGCCTTCGCACCTTGTACCAGTCG
GTCCTCATCCACGTCCTCGGTGAGCAGCAGCGGGACTGCCCCGCTTGGCAACCTCAGCTG
CGACGACATTTCCCCGATGCTGTCGGACAACAAATCGGTGCCAGGAGGGGAACAACTTGG
TCTGGATCATATTAATCACACCGAGGAGCAGATACAGAGGAACCAGCTCGTCGAAGCAGA
GCGTTTAATGGAAGCAGCTCTGCACGAGCACACCCCTCTCTCAAACCCCACTGGCTACCC
AGTTCAACTGACGATGTTGGCCCACAGCCAGCAACACTTGCACGGCCATGACAACAATAG
CCTTGGTGGAATCCCTCACTTATCCATATAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[156-262] 1.5E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[161-236] 19.901 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[161-232] 9.0E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[163-231] 5.8E-32 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[164-190] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[164-180] 6.0E-18 - T[180-195] 6.0E-18 - T[213-221] 6.0E-18 - T[221-229] 6.0E-18 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[225-235] 1.2E-17 - T[417-438] 1.2E-17 - T[438-454] 1.2E-17 - T[504-519] 1.2E-17 - T[561-578] 1.2E-17 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[356-601] 1.01E-55 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[414-435] 2.7E-9 - T[440-459] 2.7E-9 - T[504-526] 2.7E-9 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[416-573] 5.1E-24 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[418-579] 1.4E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RORG_HUMAN | 40 % | 194 | 1.08E-53 |
| RORB_HUMAN | 46.841 % | 381 | 1.16E-124 |
| RORA_HUMAN | 45.553 % | 380 | 1.05E-123 |