- Transcript 'Cisavi.CG.ENS81.R1.3...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R1.3052087-3054507.18220.t
Possible name(s)
SORL1; ST14; TMPRSS6
Gene model
Location
R1 [3,052,086 / 3,054,507]
Amino acid sequence
Length: 241
>Cisavi.CG.ENS81.R1.3052087-3054507.18220.p
MNCLASTVYFLLTFTMCSFANPLYKDDSNSNTEYYVSTDDYEYETEYADSDPRYKCPTDV
NVRIKTSRLCDGFPDCSDASDEDRNICAMYEIETTDSPAEMIHEIPTTTADPLDYLDYGE
CEEGTFQCPSHPGLCLASTTRCDGRTDCPGGEDEDNCHEVLRRPEPESIPLEDGIRMSRP
LSPSAPVNGNSIDESTATGGENARMTTVVVDPLANNVFYARKSIVPFPPQSEYDQDATSD
S
Nucleotide sequence
Length: 765
>Cisavi.CG.ENS81.R1.3052087-3054507.18220.t
CTAAGATCAAATCTGCTATTTTAAAACGAACAAAAGAAAAAAATGAATTGCCTTGCATCA
ACAGTTTACTTTCTGCTCACATTTACCATGTGTTCATTCGCTAACCCATTATATAAAGAC
GATAGCAACAGCAACACGGAATACTACGTCAGCACGGACGACTACGAGTACGAAACGGAA
TACGCCGACAGTGACCCGCGTTACAAATGCCCCACCGACGTCAACGTACGAATCAAAACT
TCACGCTTGTGCGACGGATTTCCGGATTGCTCCGATGCGTCGGACGAGGACCGCAATATA
TGTGCAATGTACGAAATAGAAACAACGGACTCCCCGGCCGAAATGATCCATGAAATCCCG
ACCACGACCGCTGACCCACTGGATTATTTAGATTATGGGGAGTGCGAAGAAGGGACCTTT
CAGTGTCCCAGTCACCCCGGACTTTGCTTGGCCTCTACGACCCGGTGTGACGGTCGCACC
GACTGCCCAGGCGGTGAAGACGAGGACAATTGTCACGAAGTACTAAGGCGACCGGAACCC
GAAAGCATTCCCCTCGAAGATGGTATCCGAATGTCACGCCCTCTCTCACCCTCAGCCCCA
GTAAATGGAAACAGCATCGATGAATCTACCGCTACCGGTGGCGAGAATGCACGCATGACC
ACTGTCGTTGTTGATCCTTTGGCGAACAATGTATTCTACGCCCGAAAAAGCATTGTTCCG
TTTCCCCCACAAAGTGAATATGACCAAGACGCGACTTCGGATTCT
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[49-89] 0.0046 - T[120-159] 8.0E-8 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[53-86] 1.96E-5 - T[121-160] 5.24E-9 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[61-82] 5.9E-8 - T[133-154] 5.9E-8 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[64-83] 0.00640313 - T[121-157] 6.91897E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[120-158] 12.4 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[120-157] 5.6E-7 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[135-157] . |
| Protein Name | Identity | Bit Score | e-value |
|---|