- Transcript 'Cisavi.CG.ENS81.R131...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R131.263992-288199.05607.t
Possible name(s)
COL1A1; COL1A2; COL2A1
Gene model
Location
R131 [266,259 / 287,902]
Amino acid sequence
Length: 1,414
>Cisavi.CG.ENS81.R131.263992-288199.05607.p
LILVVVKSDSDVDLGGGCVYKGEVYNAGDVFKPTKCEVCVCDEREVVCDFILCEVLTCPF
QISIEGQCCKVCGDGPGEFITMKIEAAPKGQKGEPGIIPDSIGEGPPGSQGLPVSYLSKI
YKDFNSLIMYNTLHCLHVVGARISDNLLVFCFQGVPGSQGLDGAPGPRGPKGERGTSGRD
GNPGVPGNPGPPGPPGPGMDSVSGYNVHRATVGHHEQECTPKRGMTSGCVGAMGPRGQPG
VSGSPGPQGFQGPPGEPGEAGPSGPPGHMGPAGIPGKDGKDGKDGRPGKTGPIGSHGPQG
PRGFAGTPGLPGAKGHKGHAGLNGLKGESGLPGADVRPGEGGPTDFLFFCILNISDTFST
FYFFSVGLTWYRWCIWCQGFNCKCSRLNLHAFYYFLGNVVGSPVSRRYRILIINFCFSSQ
TIQILFLEFKILFLLARKETLVLLDPKETLSIFCHKYTFHKHFCQLLSNSLTILRFRETL
EYKVSELIMYLLSQDLMENLSLAGKHWTTGSPRCPRRRGQKGKLTIYSLKLIYRVKSKSL
YKVKEFSINAEIHNNLLKSQGASGRRGKPGLSGPKGSVGDVGRSGEPGLPGPRGLTGKPG
SDGRQGKQGPSGPAGEDGRPGPSGATGQKGPPGQIGFPGSKGVGGEPGKSGEKGIAGPPG
SRGLAGDRGEAGQPGPPGFQGLPGPPGPNGEPGKAGETGVPGEVGPSGEAGPRGERGFPG
EAGSTGPQGLTGPRGAAGIPGSDGQKGQVGPLGPPGEAGPQGVQGTTGRRGPAGLSGSKG
ERGDSGPPGLEGEPGKEGLRGDGGNVGPEGATGPRGSPGERGEPGPDGPPGYPGSPGSEG
QPGKKGDSGSRGVKGDSGAPGLQGPAGGAGPLGPPGVAGRRGARGALGAPGPAGFPGPAG
RPGAPGDQGASGQQGNPGEPGKPGSKGASGDEGPPGPQGAFGLQGLPGQPGEPGPSGEPG
APVSLTCVGGPGASGLRGNPGSSGNPGLPGPSGSPGERGPAGLQGEEGKQGRSGLPGDRG
PPGDIGPVGPAGPSGDSGPEGMPGPEGAPGRDGSTGVKGEIGERGHTGPPGQAGMPGPPG
LHGIEGKSGPRGEPGVQGDAGQPGAAGPQGLRVSCSKNKYPDSYILIKNREKIEENVLKF
KITNLISKIIISQPGIDMAAFRFPAVSSFKGPNVAADQPVTSDVGRDPEMMLVLKELTSS
VEDIKAPRGVSRKTPARSCLDIYLAEQQQGTVPKSGVRWIDPNGGCNADGLEVYCNFHTM
ETCVYPTNRNIENGTHYTGEPGHTYYGEEMTRVEHADYASQLTFLRLLSSKAKQQVTFFC
RNMVAYYDASADNKAQALKLRGFGDAEFTAEGAVGTTYRVLHDGCSTRPTQWDRTEIEFE
TRLVGRMPITDIAPFDIGDADQQFGAKFGPVCFK
Nucleotide sequence
Length: 4,377
>Cisavi.CG.ENS81.R131.263992-288199.05607.t
CTAATTTTAGTGGTTGTAAAATCAGATTCAGATGTAGACTTGGGCGGCGGATGCGTTTAC
AAAGGCGAGGTATACAACGCCGGCGACGTATTCAAGCCGACCAAGTGCGAGGTGTGCGTA
TGCGACGAACGTGAGGTCGTCTGCGACTTCATCCTTTGTGAAGTGCTAACCTGCCCTTTC
CAAATAAGCATTGAGGGACAGTGCTGTAAAGTCTGTGGCGACGGACCAGGTGAGTTCATT
ACCATGAAGATTGAGGCTGCACCTAAAGGACAAAAAGGAGAACCTGGAATAATACCGGAC
TCTATTGGAGAAGGACCACCTGGATCTCAAGGCTTACCAGTAAGTTACCTATCTAAGATT
TATAAAGACTTTAATTCCCTCATCATGTACAATACATTGCACTGTCTGCATGTGGTGGGT
GCAAGGATATCTGACAATTTGCTAGTATTTTGCTTCCAGGGGGTCCCAGGATCACAAGGA
CTTGATGGAGCACCTGGACCCAGAGGACCAAAAGGAGAACGAGGTACATCAGGCAGAGAT
GGAAACCCTGGCGTCCCAGGAAACCCCGGACCTCCAGGACCACCTGGACCAGGAATGGAC
AGCGTAAGTGGCTATAATGTTCATCGGGCCACGGTGGGACATCATGAGCAGGAATGTACG
CCTAAAAGGGGCATGACTAGTGGTTGTGTGGGCGCTATGGGACCTAGAGGACAACCAGGT
GTTTCTGGATCACCCGGACCGCAAGGATTTCAAGGACCACCTGGCGAACCCGGCGAAGCT
GGACCCAGTGGACCACCCGGACACATGGGGCCAGCAGGCATCCCAGGAAAGGACGGAAAA
GACGGCAAAGATGGGCGCCCCGGAAAAACAGGACCTATCGGTTCTCATGGCCCACAGGGG
CCAAGAGGATTTGCCGGCACCCCTGGTCTTCCTGGTGCCAAGGGCCACAAAGGTCACGCT
GGTCTTAATGGCTTGAAGGGAGAGAGCGGTTTACCTGGAGCTGATGTAAGACCAGGTGAA
GGAGGACCGACCGATTTTCTGTTTTTTTGTATTTTAAATATATCTGACACTTTTTCAACT
TTCTATTTTTTCTCTGTAGGGCTCACCTGGTATAGATGGTGCATCTGGTGCCAAGGGTTC
AACTGTAAGTGTTCTAGGCTTAATTTACATGCATTTTATTACTTCTTGGGGAATGTTGTA
GGATCACCTGTAAGTAGAAGATATAGAATCTTGATAATCAACTTTTGCTTCTCAAGTCAA
ACTATACAAATTTTATTTTTAGAGTTTAAAATACTTTTTTTGTTGGCCCGCAAGGAAACA
TTGGTTCTTCTGGACCCAAAGGAAACACTTTCCATATTCTGCCATAAATACACATTTCAC
AAGCATTTTTGTCAATTGCTTTCAAATTCACTAACTATTTTGCGCTTTAGGGAAACCCTG
GAGTACAAGGTTTCAGAGTTAATTATGTACTTGCTTAGCCAGGATTTAATGGAAAATCTT
TCTCTTGCAGGGAAGCACTGGACCACAGGGTCTCCAAGGTGTCCAAGGAGAAGAGGGCAA
AAGGGTAAGCTCACAATTTATTCATTAAAGCTAATTTATAGAGTAAAATCAAAAAGTTTA
TACAAAGTTAAAGAATTCTCAATAAATGCTGAAATTCACAATAATTTGTTAAAATCCCAG
GGAGCTAGTGGTCGTAGGGGAAAACCCGGCCTCAGTGGCCCCAAGGGTTCGGTTGGAGAT
GTGGGAAGATCGGGTGAACCTGGCCTACCTGGACCAAGGGGTCTCACGGGAAAACCAGGT
TCGGATGGTCGACAAGGCAAGCAAGGTCCATCAGGTCCTGCTGGCGAAGATGGACGACCA
GGACCATCCGGCGCAACTGGGCAAAAGGGTCCACCTGGCCAGATTGGTTTCCCTGGATCA
AAGGGAGTTGGTGGTGAACCAGGTAAATCAGGAGAGAAAGGTATTGCTGGACCACCTGGA
TCACGTGGTCTCGCCGGAGACAGAGGAGAGGCTGGTCAACCAGGTCCGCCCGGATTCCAA
GGTCTTCCAGGTCCTCCAGGACCCAACGGAGAGCCAGGAAAGGCTGGGGAAACTGGTGTG
CCTGGAGAAGTTGGTCCGTCTGGTGAGGCCGGACCAAGAGGTGAACGGGGATTCCCCGGT
GAGGCTGGTTCAACTGGACCCCAAGGTCTCACTGGGCCACGCGGCGCTGCCGGCATCCCT
GGATCCGATGGACAGAAGGGCCAAGTCGGTCCTCTCGGGCCACCTGGCGAAGCAGGCCCA
CAAGGCGTCCAAGGTACAACTGGTCGACGTGGACCCGCTGGGTTATCTGGATCGAAGGGC
GAACGAGGTGATTCTGGACCACCTGGTTTGGAGGGTGAACCTGGAAAAGAGGGTCTTAGG
GGAGACGGCGGCAACGTTGGACCCGAAGGTGCTACTGGACCCAGAGGATCACCTGGTGAG
AGAGGGGAACCAGGACCTGATGGACCACCAGGATACCCAGGATCTCCGGGTTCCGAGGGT
CAACCTGGAAAGAAGGGCGACTCCGGCTCACGAGGTGTCAAGGGAGACTCCGGTGCACCT
GGGCTACAAGGACCTGCCGGAGGTGCCGGACCACTTGGTCCTCCTGGTGTCGCTGGGCGC
AGAGGAGCTCGAGGGGCACTTGGTGCACCGGGACCTGCAGGATTCCCAGGACCAGCTGGA
CGACCTGGCGCTCCAGGAGATCAGGGAGCTTCAGGACAGCAAGGTAACCCAGGAGAACCA
GGAAAACCAGGATCCAAAGGAGCAAGTGGTGATGAAGGACCACCTGGACCACAAGGAGCA
TTCGGTCTACAAGGATTGCCCGGTCAGCCTGGCGAGCCCGGACCTAGCGGTGAACCTGGT
GCACCGGTAAGTTTAACTTGTGTGGGAGGCCCTGGTGCTTCTGGACTCAGAGGAAACCCT
GGATCATCTGGAAACCCTGGTCTACCTGGACCGTCTGGATCACCTGGTGAGAGAGGACCA
GCTGGATTGCAGGGTGAAGAGGGCAAACAAGGTCGATCAGGTCTTCCCGGCGATCGTGGT
CCTCCAGGCGACATCGGCCCTGTAGGACCTGCTGGCCCATCTGGCGATTCTGGACCCGAG
GGCATGCCTGGACCTGAAGGCGCACCTGGCCGCGACGGATCCACTGGAGTTAAGGGTGAA
ATTGGTGAAAGAGGCCACACTGGGCCACCCGGACAAGCGGGCATGCCTGGCCCACCTGGC
CTACATGGCATTGAAGGAAAGAGTGGCCCACGCGGCGAACCAGGAGTTCAAGGTGATGCA
GGGCAACCTGGTGCAGCTGGTCCACAAGGTCTTCGAGTAAGTTGCTCTAAAAATAAATAC
CCAGATAGTTATATTCTTATAAAAAATAGGGAAAAAATTGAAGAAAATGTTTTAAAATTT
AAAATAACGAACTTAATAAGTAAAATAATTATTTCGCAGCCTGGCATAGACATGGCAGCC
TTCCGATTCCCAGCTGTGAGTTCATTCAAGGGACCAAATGTGGCAGCTGACCAGCCAGTG
ACCAGTGATGTTGGACGTGATCCAGAGATGATGTTGGTCTTGAAAGAGCTGACCAGCTCA
GTGGAAGACATCAAAGCCCCACGTGGTGTGAGCCGCAAGACGCCAGCTCGGTCGTGCTTG
GACATCTATTTGGCTGAACAACAGCAGGGAACTGTACCCAAGAGCGGTGTCCGATGGATC
GATCCGAACGGCGGCTGCAACGCTGACGGACTCGAGGTTTACTGCAACTTCCACACAATG
GAGACTTGCGTCTACCCGACCAACCGCAACATAGAGAACGGCACCCACTACACCGGCGAG
CCTGGACATACCTACTACGGCGAAGAGATGACCAGAGTTGAGCACGCAGACTACGCCTCG
CAGCTCACGTTCCTGCGGTTGCTCAGTAGCAAGGCCAAGCAGCAAGTGACGTTCTTCTGC
CGCAACATGGTGGCTTACTACGATGCTTCGGCCGACAACAAGGCGCAAGCGCTGAAACTC
CGTGGCTTCGGAGACGCCGAGTTCACCGCTGAGGGCGCTGTCGGCACCACCTACAGAGTG
TTGCACGATGGATGCTCTACCCGGCCGACGCAATGGGACCGAACCGAGATCGAGTTCGAG
ACCCGCCTGGTCGGAAGAATGCCGATCACGGACATCGCTCCGTTCGACATCGGTGACGCG
GATCAGCAGTTCGGCGCCAAGTTCGGCCCAGTCTGCTTCAAATAAGTCTCAGGCGGCCGC
AGCCCGGCACCTGAGCGCACCACCAGATAACGAACTGAATTTAAACGGACCCGACCCCGA
TTACCGCCCGCTCCCTAAACGGATTTGACGATTGGCAGGCGGGAGCATCGCTCCTGC
| ProSiteProfiles |
VWF_dom (IPR001007) - T[16-73] 11.281 |
| SMART |
VWF_dom (IPR001007) - T[18-72] 4.3E-12 |
| Pfam |
VWF_dom (IPR001007) - T[18-72] 2.1E-10 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[36-72] . |
| Pfam |
Collagen (IPR008160) - T[154-196] 9.9E-7 - T[228-286] 2.6E-9 - T[279-335] 1.2E-7 - T[561-615] 3.5E-8 - T[645-703] 9.7E-9 - T[702-757] 5.1E-8 - T[742-798] 1.4E-6 - T[804-861] 4.2E-8 - T[858-915] 2.0E-6 - T[903-961] 3.1E-9 - T[969-1027] 1.3E-8 - T[1050-1108] 4.3E-8 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1187-1413] 1.0E-80 |
| SMART |
Fib_collagen_C (IPR000885) - T[1187-1414] 9.4E-83 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1188-1414] 71.478 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1302-1413] 1.0E-47 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 34.078 % | 327 | 1.9E-91 |
| CO1A2_HUMAN | 42.827 % | 404 | 1.13E-118 |
| CO2A1_HUMAN | 51.254 % | 305 | 9.06E-85 |