- Transcript 'Cisavi.CG.ENS81.R1.3...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R1.3476235-3487723.18708.t
Possible name(s)
ZNF543; ZNF84; ZSCAN2
Gene model
Location
R1 [3,476,234 / 3,487,723]
Amino acid sequence
Length: 748
>Cisavi.CG.ENS81.R1.3476235-3487723.18708.p
MEFEKHENENVNVISVPILQDPQIMMPQAQEKTGLNEENFTTNSIDTSNQGDLIPSNDSP
NPTNLPIYLFTTEGSDGSTQRYIVSDPFKDAEIGESSNLFKDSYISVGTSTNLSSSLSYP
LSYYTSNTASGDSSQILSILHENQGTSNVNTQVTSSNLSEEMIRSFVVGGNPQQSQGATD
PSQVVTAIINDDEKKSISTADKQVIILTEGPEADDLVIEDESYFQDGELDNYEGGGEFTV
TLLPNKEDIQVYDETGLGGWCDVITNEDTELDLQFEVAGEITNLDGQLLRREIVTQTNTW
KKLKAPIKHKESFKSNLIGNKTKKQSKKQFKCERCSARFERNEDLDLHSKCHTTIDKIYK
CFHCEERFDNWPKMHQHLFSHGIEKPHKCLKCSFSSMNRSDLSAHSFVHSQDKHWLCTKC
DRQFKHRRNMVAHHRTCAGLDETGKLKTQKKDEKFVCSVCQKQLSNKRSLDKHFEIHLDV
KPFVCDLCGHSTRLKESLIMHKRLHTGEKPYKCDVCNYATPDKSSLRRHKRRHSDEKPYK
CSFCGYKCIQKHCLDNHVRRKHTGEQFVCGLCHFSTHDRYGLNQHFKQHQGNAEINNNQQ
AIVNISTDGVVTTVSKEEEVSTKPDLEMDFGNGESMVLQIQPSGENKNENWAAADTPLSG
NVVLNKDLLLETQPVNIEAIPVNSVEPHVIQLTGPEGTLLQQIQQPGDLVFLRGNGELLI
KRSDGTILLIQQQLEDKENPETSPNAEA
Nucleotide sequence
Length: 2,278
>Cisavi.CG.ENS81.R1.3476235-3487723.18708.t
ATGGAGTTTGAAAAACATGAAAATGAAAATGTAAATGTAATTTCCGTCCCAATATTGCAA
GACCCTCAAATAATGATGCCACAAGCTCAAGAAAAGACAGGTTTGAACGAAGAAAATTTC
ACGACAAATTCTATAGATACCTCGAACCAAGGTGACCTCATACCGTCCAATGATTCTCCC
AATCCAACCAACCTTCCAATTTATTTGTTCACGACTGAGGGAAGTGATGGAAGCACTCAG
CGATACATTGTTAGCGACCCTTTCAAGGATGCTGAAATTGGGGAATCTTCAAACTTATTC
AAAGACAGCTATATATCGGTTGGTACCTCAACGAATTTGAGCTCCAGTTTGAGCTATCCT
CTATCTTACTATACCTCCAACACTGCGTCTGGTGACAGCTCGCAAATATTATCAATTCTA
CACGAAAACCAGGGAACCAGCAATGTTAATACACAAGTGACATCCTCAAACTTATCCGAA
GAGATGATTCGCAGTTTTGTAGTTGGGGGAAACCCCCAACAATCTCAAGGGGCAACTGAC
CCAAGCCAGGTCGTAACTGCAATAATCAATGACGATGAAAAAAAATCTATCTCCACAGCC
GATAAGCAAGTGATCATTTTGACGGAAGGTCCGGAGGCAGACGACCTGGTTATAGAAGAC
GAAAGCTACTTCCAAGATGGGGAACTCGATAATTATGAGGGTGGTGGTGAGTTTACTGTC
ACCTTGCTTCCAAACAAAGAAGATATTCAAGTTTACGATGAAACCGGTTTAGGTGGGTGG
TGTGATGTAATAACAAACGAAGATACGGAACTTGACCTCCAGTTCGAAGTAGCGGGTGAG
ATCACGAATTTGGACGGTCAGCTGTTGCGTCGTGAGATCGTAACACAAACCAACACGTGG
AAGAAACTTAAAGCTCCGATCAAACACAAAGAGAGCTTCAAAAGCAATCTCATTGGCAAT
AAAACGAAAAAGCAAAGCAAAAAGCAATTTAAATGTGAAAGATGCTCTGCCAGGTTTGAA
CGTAACGAGGACTTAGACCTGCATAGTAAATGTCACACCACCATCGATAAAATTTACAAA
TGTTTTCATTGCGAAGAAAGGTTTGACAACTGGCCCAAAATGCACCAACACTTATTCAGC
CATGGTATCGAGAAGCCACACAAATGTCTGAAGTGTTCGTTCTCATCTATGAACAGAAGT
GATCTATCGGCGCATTCCTTTGTTCACAGCCAGGACAAACACTGGCTCTGTACTAAATGC
GACCGGCAGTTCAAACACAGACGAAACATGGTCGCACATCATCGCACATGCGCCGGCCTA
GATGAAACAGGAAAATTGAAAACTCAAAAGAAAGACGAGAAATTCGTGTGCAGCGTTTGT
CAGAAGCAGCTCAGCAACAAACGAAGTCTCGATAAACACTTTGAAATCCACCTTGATGTG
AAACCATTTGTCTGCGATTTGTGCGGCCATTCCACCCGACTCAAGGAATCTCTTATAATG
CACAAGAGGCTACACACAGGAGAGAAGCCGTACAAATGTGATGTTTGCAACTACGCCACT
CCAGACAAATCTTCATTACGACGGCATAAACGACGACATTCTGACGAGAAACCGTACAAA
TGTTCATTTTGTGGATACAAATGCATCCAAAAGCATTGTCTCGACAACCACGTTCGACGT
AAGCACACGGGGGAGCAATTCGTGTGCGGATTGTGTCACTTTTCCACGCATGACCGATAC
GGGTTGAATCAACACTTCAAACAACACCAGGGAAACGCTGAGATCAACAACAATCAACAA
GCAATCGTCAACATATCAACTGATGGGGTGGTCACCACTGTTTCAAAGGAAGAGGAAGTT
TCCACCAAACCTGACCTGGAAATGGATTTCGGGAATGGAGAGAGCATGGTCTTGCAAATC
CAACCCAGTGGAGAGAATAAAAATGAAAACTGGGCAGCAGCTGACACTCCATTATCAGGA
AACGTGGTTTTAAACAAAGACCTCTTGTTGGAAACTCAACCAGTCAACATAGAAGCAATC
CCTGTAAACAGTGTGGAACCTCACGTGATACAGTTAACTGGTCCGGAGGGAACTTTGTTG
CAACAAATACAACAACCTGGAGATCTGGTATTTCTAAGGGGTAATGGAGAATTGTTGATC
AAACGATCAGATGGAACTATTCTGTTAATACAACAACAACTGGAAGACAAAGAAAATCCA
GAAACTTCTCCGAATGCTGAAGCTGCTTTGTGATTTGTGAATATTACACTGCCCCATG
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[328-381] 1.25E-5 - T[385-436] 2.0E-7 - T[454-505] 3.09E-11 - T[495-545] 2.02E-17 - T[537-564] 7.74E-6 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[330-357] 10.429 - T[359-386] 10.492 - T[387-414] 8.891 - T[415-442] 9.016 - T[455-482] 11.302 - T[483-510] 14.295 - T[511-538] 13.692 - T[539-567] 10.949 |
| SMART |
Znf_C2H2_type (IPR013087) - T[330-352] 0.78 - T[359-381] 0.34 - T[387-409] 2.8 - T[415-435] 57.0 - T[455-477] 0.02 - T[483-505] 0.086 - T[511-533] 7.4E-5 - T[539-562] 0.11 - T[567-589] 0.2 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[332-352] . - T[361-381] . - T[457-477] . - T[541-562] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZSCA2_HUMAN | 33.818 % | 158 | 6.78E-41 |
| ZNF84_HUMAN | 33.333 % | 158 | 1.81E-40 |
| ZN543_HUMAN | 35.789 % | 164 | 7.54E-43 |