- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'Moocul.CG.ELv1_2.S10...' >
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- Transcript 'KH2012:KH.C1.567.v2....' >
- Transcript 'Cisavi.CG.ENS81.R14....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R14.1028656-1037772.18298.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R14 [1,028,674 / 1,037,354]
Amino acid sequence
Length: 904
>Cisavi.CG.ENS81.R14.1028656-1037772.18298.p
MPLRLDIKRKLNARSDRVKCVDLHPTEPWMLVSLYNGNVHIWNHETQVLVKSFEICDLPV
RATRFVPRKNWVITGSDDMQVRVFNYNTLERTHAFEAHTDYIRSIAVHPTQPYILTSSDD
MLIKLWDWDKKWSCAQVFEGHTHYVMQIVINPKDNNQFASASLDCSIKVWQLGSATPNFT
LTGHDKGVNCVDYYSGGDKPYLISGADDRLTKIWDYQNKTCVQTLEGHSQNIVCVSFHPE
LPIIMTGSEDGTIKIWHANTYRLETTLNYGMERVWCISAMKGSNNIALGYDEGSIMIKLG
REEPAMSMDGSGKIIWAKHSEIQQANLKAMADQDLKDGERLQLSVKDMGSCEVYPQTLKH
NANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWAQDSSEYAVRESGTSVKLFKNFKE
RKSFKPDFGAEGIFGGHLLGVRTSQGLAFYDWEHLELVRRIEINPKNVFWSDNGDLVCIT
ADESFYILKYDQSKIEESKENTDLVTEDGITDAFSDDIGEVEEVVKTGLWVGDCFIYTNA
VNRLNYYVGGEIVTIAHLDRVLYLLGYIPSDNRLYLGDKELNVVSYSLLLSVLEYQTAVM
REDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDSEHKFELALGLGDLKIAYQ
LAQEAQAEQKWKQLAELATRKCEFGLAQECLRQAQDFGGLLLLATSAGNSTMVKSLADNA
KAGGKNNVAFLSYFVTGQTDKCLELLISTNRLPEAAFFARTYLPSQVSRVVQLWKVNLGE
SNKKAADALADPAKYENLFPNLAESLVAEKYLAATEERRPASHYPVTPVNDERNVLEESA
GFDPGEAEQMIETTDALLDFFTNSSLKCFTKCFTQDLELDIENLELDDDIDTSGVNLDDE
LLED
Nucleotide sequence
Length: 2,873
>Cisavi.CG.ENS81.R14.1028656-1037772.18298.t
TTATTTGTATAAACTTTTTCTGTAATTTTTACCAGAATTATACGGAATTTGAAAAATACC
ATATATATACTTAATACGAGCTTTCCGCTTTTGCTCGAGTGATCTGAATTCTTCTAGGGC
AGTGATCAACTTTTTACTTCTCTGGTCATAATATTATCATGCCTTTACGCTTGGACATTA
AGAGGAAATTAAATGCGAGGTCGGATCGAGTGAAATGTGTTGATCTCCATCCAACTGAGC
CATGGATGTTAGTTTCACTTTACAATGGTAATGTTCACATTTGGAACCATGAAACTCAAG
TCTTGGTCAAATCTTTTGAAATATGTGATCTTCCTGTCAGAGCCACCCGTTTCGTTCCTC
GTAAAAACTGGGTGATCACTGGTTCGGATGACATGCAAGTTCGTGTGTTTAACTACAACA
CGCTGGAGCGAACCCACGCATTTGAAGCGCACACAGATTACATCCGTTCTATCGCTGTGC
ATCCGACACAGCCTTATATATTAACCAGCAGTGACGACATGCTGATAAAATTATGGGATT
GGGACAAGAAATGGAGCTGTGCACAAGTGTTTGAAGGCCACACACACTATGTCATGCAAA
TTGTCATCAATCCAAAAGATAACAATCAATTTGCAAGTGCTTCTCTTGACTGCAGCATCA
AAGTTTGGCAGCTTGGTTCTGCAACACCAAATTTTACACTAACAGGACATGATAAAGGCG
TCAATTGCGTGGACTACTACAGTGGGGGAGACAAGCCATACCTCATATCTGGAGCTGATG
ACAGACTTACAAAGATTTGGGACTACCAGAACAAGACATGTGTTCAGACACTAGAGGGAC
ACTCACAGAACATTGTGTGCGTCAGCTTTCACCCTGAGCTACCAATCATTATGACTGGCT
CTGAAGATGGCACTATTAAGATTTGGCATGCGAATACCTACCGTCTTGAAACCACACTTA
ACTATGGCATGGAACGTGTGTGGTGCATATCTGCTATGAAGGGTTCAAACAACATTGCGC
TTGGATATGATGAAGGAAGTATAATGATTAAGCTTGGCAGGGAAGAGCCAGCTATGTCCA
TGGATGGCAGTGGAAAGATCATATGGGCCAAGCACTCTGAGATACAACAAGCCAATTTGA
AAGCAATGGCTGACCAGGACCTGAAGGATGGGGAGAGATTGCAGCTATCTGTGAAAGACA
TGGGTAGTTGTGAGGTTTATCCACAAACACTGAAGCACAATGCAAATGGAAGATTCGTGG
TGGTTTGTGGCGATGGGGAATACATCATATACACTGCTATGGCGCTGAGGAACAAAGCAT
TTGGTTCGGCTCTCGAGTTTACATGGGCGCAAGATTCATCAGAGTATGCTGTGAGAGAAA
GTGGCACTTCCGTTAAGCTGTTCAAGAATTTTAAAGAGAGAAAATCATTCAAGCCTGACT
TCGGGGCGGAAGGAATCTTTGGGGGTCATTTGCTTGGGGTTCGAACCTCGCAGGGGCTTG
CTTTCTATGACTGGGAGCATCTTGAACTTGTCCGCAGGATTGAGATCAACCCCAAAAATG
TGTTTTGGTCGGACAACGGGGACCTGGTTTGCATCACCGCAGACGAATCGTTCTACATCC
TCAAATACGATCAATCCAAGATCGAAGAATCGAAGGAAAACACCGACCTTGTTACAGAGG
ATGGTATCACTGATGCATTTAGCGATGACATCGGAGAGGTGGAAGAAGTAGTGAAGACTG
GTTTGTGGGTGGGTGATTGCTTCATATACACCAACGCGGTGAATCGACTGAACTACTATG
TTGGTGGGGAGATTGTCACCATCGCTCATTTGGACAGAGTTCTGTATTTGCTGGGCTACA
TTCCAAGTGATAATCGACTGTACCTTGGCGACAAGGAGCTCAATGTGGTGAGTTACTCCT
TGCTGCTGTCCGTCCTTGAATACCAAACTGCGGTGATGAGGGAGGATTTCGAGACGGCTG
ATAAAGTTCTTCCTTCCATTCCTAAAGAGCAGAGGACCAGAGTCGCTCACTTCCTCGAGA
AACAGGGATTCAAACCTCAAGCGATGGCCGTGACCAGCGACTCGGAACATAAATTTGAAC
TCGCTCTTGGATTGGGTGACCTCAAAATAGCATACCAACTTGCACAAGAAGCCCAGGCCG
AACAAAAGTGGAAGCAGCTTGCAGAGCTGGCAACCCGGAAATGTGAATTTGGATTAGCGC
AGGAGTGTCTTCGACAGGCACAGGATTTCGGTGGCTTGTTGTTATTAGCCACATCTGCAG
GAAATTCCACCATGGTCAAATCTCTTGCTGATAATGCCAAAGCTGGAGGCAAAAACAACG
TTGCTTTCCTGAGTTACTTTGTCACTGGTCAAACTGACAAGTGCCTTGAACTCTTAATCA
GCACCAACCGACTTCCTGAAGCTGCCTTTTTCGCACGAACTTATTTACCCAGTCAAGTCA
GCAGAGTGGTGCAACTGTGGAAGGTGAACCTGGGTGAATCGAACAAGAAAGCTGCTGATG
CACTTGCTGATCCGGCCAAATATGAAAATTTGTTTCCCAATCTCGCTGAGAGTTTGGTTG
CAGAGAAATATCTTGCTGCTACTGAAGAACGGAGACCTGCTTCCCACTACCCAGTCACTC
CAGTCAATGATGAGAGGAATGTTCTGGAAGAATCTGCAGGTTTCGATCCCGGTGAGGCAG
AGCAGATGATTGAGACTACCGATGCACTTTTAGATTTTTTTACGAACAGTAGTTTAAAAT
GTTTTACAAAATGTTTCACGCAGGACCTTGAACTTGACATTGAGAACTTGGAGTTGGACG
ATGATATTGATACAAGTGGAGTTAATTTGGATGACGAACTTTTAGAAGATTAA
| PIRSF |
COPB2 (IPR016453) - T[2-858] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[3-297] 4.58E-80 |
| SMART |
WD40_repeat (IPR001680) - T[4-43] 0.1 - T[46-85] 0.031 - T[88-127] 1.8E-8 - T[131-171] 1.2E-7 - T[174-215] 2.8E-6 - T[218-257] 8.5E-11 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[11-300] 1.2E-108 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[11-266] 49.645 |
| Pfam |
WD40_repeat (IPR001680) - T[60-85] 0.25 - T[92-127] 2.6E-5 - T[132-170] 0.021 - T[177-215] 2.8E-5 - T[220-256] 4.6E-9 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[95-127] 13.55 - T[138-180] 11.31 - T[181-224] 12.146 - T[225-266] 16.223 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[114-128] 6.0E-5 - T[202-216] 6.0E-5 - T[244-258] 6.0E-5 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[319-763] 5.4E-167 |
| SUPERFAMILY |
Quino_amine_DH_bsu (IPR011044) - T[337-586] 2.12E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 25.658 % | 244 | 2.44E-67 |
| COPB2_HUMAN | 73.275 % | 1441 | 0 |
| LIS1_HUMAN | 24.731 % | 110 | 7.89E-26 |